View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4405_low_3 (Length: 843)

Name: NF4405_low_3
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4405_low_3
NF4405_low_3
[»] chr1 (1 HSPs)
chr1 (652-830)||(45066052-45066230)
[»] chr2 (2 HSPs)
chr2 (675-830)||(4472749-4472905)
chr2 (653-776)||(42904913-42905037)
[»] chr7 (3 HSPs)
chr7 (652-813)||(3219885-3220048)
chr7 (705-786)||(2534592-2534673)
chr7 (752-810)||(3756226-3756284)
[»] chr8 (4 HSPs)
chr8 (652-827)||(24248682-24248859)
chr8 (652-740)||(28740123-28740211)
chr8 (678-830)||(5244771-5244924)
chr8 (707-782)||(12691670-12691745)
[»] chr6 (4 HSPs)
chr6 (675-832)||(3293383-3293541)
chr6 (675-777)||(6919034-6919136)
chr6 (711-777)||(4834696-4834762)
chr6 (55-121)||(12316693-12316758)
[»] scaffold1064 (1 HSPs)
scaffold1064 (669-782)||(455-568)
[»] scaffold0135 (1 HSPs)
scaffold0135 (659-740)||(40097-40177)
[»] chr4 (2 HSPs)
chr4 (659-740)||(9234232-9234312)
chr4 (670-777)||(9236885-9236992)
[»] chr5 (1 HSPs)
chr5 (697-783)||(39003876-39003962)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 1e-62; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 652 - 830
Target Start/End: Original strand, 45066052 - 45066230
Alignment:
Q  652 ctactcctatctaaaatactaaaataatactgaaattcttcgttcattcaatataaggtcatacaatgcttatataggtaaatgcacactcacaataaga 751  Q
    |||||| ||||||| | |||||||||||| ||||||||||| || |||||||||||||| ||||||| |||||||||||||||||||| |||||||||||    
T  45066052 ctactcatatctaagaaactaaaataatattgaaattcttcattgattcaatataaggttatacaatacttatataggtaaatgcacattcacaataaga 45066151  T
Q  752 caagtgaatcctaacatactcaatatcactccctacattagatccttctagattaagatgagtcattttgcttctagaa 830  Q
    |||||| | |||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||    
T  45066152 caagtgcaccctaacatactcaatatcactttctacattagatccttctagattaagatgagtaattttgcttctagaa 45066230  T

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Target: chr2 (Bit Score: 97; Significance: 3e-47; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 675 - 830
Target Start/End: Complemental strand, 4472905 - 4472749
Alignment:
Q  675 ataatactgaaattcttcgttcattcaatataaggtcatacaatgcttatataggtaaatgcacactcacaataagacaagtgaatcctaacatactcaa 774  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||| | | ||||||| ||||    
T  4472905 ataatactgaaattcttcgtttattcaatataaggtcatacaatgcttatataggtaaatacactcccacaataagacaagtgcaccataacatattcaa 4472806  T
Q  775 tatcactccctacattagatccttctagattaagatgagtcat-tttgcttctagaa 830  Q
    ||| | || ||||||||||||||||||||||||| ||| |||| |||||||||||||    
T  4472805 tattaatcactacattagatccttctagattaaggtgaatcatctttgcttctagaa 4472749  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 653 - 776
Target Start/End: Complemental strand, 42905037 - 42904913
Alignment:
Q  653 tactcctatctaaaatactaaa-ataatactgaaattcttcgttcattcaatataaggtcatacaatgcttatataggtaaatgcacactcacaataaga 751  Q
    ||||| ||||||| | |||||| |||||| ||||||||||  || ||||| || |||||||||||||| ||||||||||||||| |||   |||||||||    
T  42905037 tactcttatctaagaaactaaagataataatgaaattctttattgattcattacaaggtcatacaatgtttatataggtaaatgtacatctacaataaga 42904938  T
Q  752 caagtgaatcctaacatactcaata 776  Q
     ||| | | || |||||||||||||    
T  42904937 taagcgcaccccaacatactcaata 42904913  T

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Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 652 - 813
Target Start/End: Original strand, 3219885 - 3220048
Alignment:
Q  652 ctactcctatctaaaatactaaa-ataatactgaaattcttcgttcattcaat-ataaggtcatacaatgcttatataggtaaatgcacactcacaataa 749  Q
    ||||| |||||||| | |||||| |||||||| ||||||||| || ||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||    
T  3219885 ctacttctatctaagaaactaaagataatactcaaattcttcattaattcatttataaggtcatacaattcttatataggtaaatgcacacccacaataa 3219984  T
Q  750 gacaagtgaatcctaacatactcaatatcactccctacattagatccttctagattaagatgag 813  Q
    |||||||| | || |||||| ||||||| |||||||||| ||||||||||||||||||| ||||    
T  3219985 gacaagtgtacccaaacatattcaatattactccctacagtagatccttctagattaaggtgag 3220048  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 705 - 786
Target Start/End: Original strand, 2534592 - 2534673
Alignment:
Q  705 taaggtcatacaatgcttatataggtaaatgcacactcacaataagacaagtgaatcctaacatactcaatatcactcccta 786  Q
    ||||||||||||||||||||||||| |||| || || |||||||||||||||| | ||||||||||||||||| ||||||||    
T  2534592 taaggtcatacaatgcttatataggcaaattcatacccacaataagacaagtgcaccctaacatactcaatattactcccta 2534673  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 752 - 810
Target Start/End: Original strand, 3756226 - 3756284
Alignment:
Q  752 caagtgaatcctaacatactcaatatcactccctacattagatccttctagattaagat 810  Q
    |||||| | ||||||||||||||||| |||||| ||||||||||| ||| |||||||||    
T  3756226 caagtgcaccctaacatactcaatattactccccacattagatccatcttgattaagat 3756284  T

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Target: chr8 (Bit Score: 82; Significance: 3e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 652 - 827
Target Start/End: Complemental strand, 24248859 - 24248682
Alignment:
Q  652 ctactcctatctaaaatactaaa-ataatactgaaattcttcgttcattcaatataaggtcatacaatgcttatataggtaaatgcacactcacaataag 750  Q
    |||||||||||||  | |||||| |||||||||||| | ||| || |||||||||||||||||||||| |||||||||||||| | |||| ||||| |||    
T  24248859 ctactcctatctatgaaactaaagataatactgaaaattttcattgattcaatataaggtcatacaatacttatataggtaaacgaacacccacaacaag 24248760  T
Q  751 acaagtgaatcctaacatactcaatatcactccctacattagatccttctagattaagatgagtcat-tttgcttcta 827  Q
    ||||||| ||| || |||||||||||| ||||||||||||||||| || ||||||||| ||||| || ||||||||||    
T  24248759 acaagtgcatcataccatactcaatattactccctacattagatcattatagattaaggtgagttatctttgcttcta 24248682  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 652 - 740
Target Start/End: Complemental strand, 28740211 - 28740123
Alignment:
Q  652 ctactcctatctaaaatactaaaataatactgaaattcttcgttcattcaatataaggtcatacaatgcttatataggtaaatgcacac 740  Q
    |||||||||| ||| |||||||||||||| ||||||||||| ||  || | ||||||||||||||||| ||||||||||||||||||||    
T  28740211 ctactcctatataagatactaaaataataatgaaattcttcattactttattataaggtcatacaatgtttatataggtaaatgcacac 28740123  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 678 - 830
Target Start/End: Original strand, 5244771 - 5244924
Alignment:
Q  678 atactgaaattcttcgttcattcaatataaggtcatacaatgcttatataggtaaatgcacactcacaataagacaagtgaatcctaacatactcaatat 777  Q
    ||||| ||||| ||| || ||||  |||||||||||||||||  ||| |||||||||  |||| || ||||||| ||||| |  | |||| |||||||||    
T  5244771 atactcaaatttttcattgattcgttataaggtcatacaatgtctatgtaggtaaatatacacccataataagataagtgcacaccaacaaactcaatat 5244870  T
Q  778 cactccctacattagatccttctagattaagatgagtcat-tttgcttctagaa 830  Q
     ||| ||||||||||| ||||||||| |||| |||||| | |||||||||||||    
T  5244871 tacttcctacattagacccttctagaataaggtgagtcgtctttgcttctagaa 5244924  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 707 - 782
Target Start/End: Original strand, 12691670 - 12691745
Alignment:
Q  707 aggtcatacaatgcttatataggtaaatgcacactcacaataagacaagtgaatcctaacatactcaatatcactc 782  Q
    ||||||||||||| |||||||||||||| || || | |||||||||||||| | ||||| ||||||||||| ||||    
T  12691670 aggtcatacaatgtttatataggtaaattcatacccgcaataagacaagtgcaccctaatatactcaatattactc 12691745  T

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Target: chr6 (Bit Score: 67; Significance: 3e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 675 - 832
Target Start/End: Original strand, 3293383 - 3293541
Alignment:
Q  675 ataatactgaaattcttcgttcattcaatataaggtcatacaatgcttatataggtaaatgcacactcacaataagacaagtgaatcctaacatactcaa 774  Q
    |||||||||||||||||| || ||| | ||| ||||||||||||| |||||||| ||||||||||| | |||||||||||||| | | ||||||| | ||    
T  3293383 ataatactgaaattcttcattgatttattatgaggtcatacaatgtttatatagataaatgcacacccgcaataagacaagtgcaccataacatatttaa 3293482  T
Q  775 tatcactccctacattagatccttctagattaagatgagtcat-tttgcttctagaatt 832  Q
    ||| | | | || ||||||||||| || ||||||||||||||| |||||||||||||||    
T  3293483 tattatttcttagattagatccttataaattaagatgagtcatatttgcttctagaatt 3293541  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 675 - 777
Target Start/End: Original strand, 6919034 - 6919136
Alignment:
Q  675 ataatactgaaattcttcgttcattcaatataaggtcatacaatgcttatataggtaaatgcacactcacaataagacaagtgaatcctaacatactcaa 774  Q
    |||||| ||||||||||| |  ||||| ||||  ||||||||||  || ||||||||||||||||||| ||||||||||||||  || ||||||| ||||    
T  6919034 ataatattgaaattcttcatcgattcattatattgtcatacaatatttttataggtaaatgcacactcccaataagacaagtgggtcataacatattcaa 6919133  T
Q  775 tat 777  Q
    |||    
T  6919134 tat 6919136  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 711 - 777
Target Start/End: Complemental strand, 4834762 - 4834696
Alignment:
Q  711 catacaatgcttatataggtaaatgcacactcacaataagacaagtgaatcctaacatactcaatat 777  Q
    ||||||||||||||||||    ||||| ||||| ||||||| ||||| | |||||||||||||||||    
T  4834762 catacaatgcttatatagacttatgcatactcataataagataagtgcaccctaacatactcaatat 4834696  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 12316758 - 12316693
Alignment:
Q  55 aaagttgatcgagaacatgcttgtagcatatagagccaaaaactttaagatgtcatacatttggctt 121  Q
    |||||||||| ||||||||||| || |||||||| ||||| ||||||||||  | ||||||||||||    
T  12316758 aaagttgatc-agaacatgcttataacatatagatccaaagactttaagataacttacatttggctt 12316693  T

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Target: scaffold1064 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 669 - 782
Target Start/End: Complemental strand, 568 - 455
Alignment:
Q  669 actaaaataatactgaaattcttcgttcattcaatataaggtcatacaatgcttatataggtaaatgcacactcacaataagacaagtgaatcctaacat 768  Q
    |||||||||||| ||||||| ||| ||   ||| ||||||||| |||||||||||||||| ||||| |||||  |||||||||  |||  | ||||||||    
T  568 actaaaataatattgaaatttttcattgtatcattataaggtcttacaatgcttatatagttaaatacacacctacaataagatgagtacaccctaacat 469  T
Q  769 actcaatatcactc 782  Q
    ||||||||| ||||    
T  468 actcaatattactc 455  T

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Target: scaffold0135 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 659 - 740
Target Start/End: Complemental strand, 40177 - 40097
Alignment:
Q  659 tatctaaaatactaaaataatactgaaattcttcgttcattcaatataaggtcatacaatgcttatataggtaaatgcacac 740  Q
    ||||||| | |||||||||| ||||||||| ||| || ||||| ||||||||| | | ||||||||||||||||||||||||    
T  40177 tatctaacaaactaaaataacactgaaattgttcattgattcattataaggtc-tccgatgcttatataggtaaatgcacac 40097  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 659 - 740
Target Start/End: Complemental strand, 9234312 - 9234232
Alignment:
Q  659 tatctaaaatactaaaataatactgaaattcttcgttcattcaatataaggtcatacaatgcttatataggtaaatgcacac 740  Q
    ||||||| | |||||||||| ||||||||| ||| || ||||| ||||||||| | | ||||||||||||||||||||||||    
T  9234312 tatctaacaaactaaaataacactgaaattgttcattgattcattataaggtc-tccgatgcttatataggtaaatgcacac 9234232  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 670 - 777
Target Start/End: Complemental strand, 9236992 - 9236885
Alignment:
Q  670 ctaaaataatactgaaattcttcgttcattcaatataaggtcatacaatgcttatataggtaaatgcacactcacaataagacaagtgaatcctaacata 769  Q
    ||||||||||| ||||||| ||  ||   ||| ||||||||| |||||||||||||||||||||| |||||  |||||||||  |||  | | |||||||    
T  9236992 ctaaaataatattgaaattttttattgtatcattataaggtcttacaatgcttatataggtaaatacacacctacaataagatgagtacaccttaacata 9236893  T
Q  770 ctcaatat 777  Q
    ||||||||    
T  9236892 ctcaatat 9236885  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 697 - 783
Target Start/End: Complemental strand, 39003962 - 39003876
Alignment:
Q  697 attcaatataaggtcatacaatgcttatataggtaaatgcacactcacaataagacaagtgaatcctaacatactcaatatcactcc 783  Q
    ||||| ||| |||||||| ||||| |||||| ||||||| |||| ||| |||||||||||| |  |||||||| | ||||| |||||    
T  39003962 attcattatgaggtcatataatgcctatatacgtaaatgtacacccacgataagacaagtgtactctaacatatttaatattactcc 39003876  T

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