View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4405_low_33 (Length: 286)

Name: NF4405_low_33
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4405_low_33
NF4405_low_33
[»] chr7 (1 HSPs)
chr7 (1-286)||(42158603-42158888)


Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 42158603 - 42158888
Alignment:
Q  1 tgtctctaagtttatatgttatttcaactttttcaagcaatgattatcatgattcatgaatgatgttgctatgataatagattatcaacgtggattctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42158603 tgtctctaagtttatatgttatttcaactttttcaagcaatgattatcatgattcatgaatgatgttgctatgataatagattatcaacgtggattctct 42158702  T
Q  101 cttttggtttgtccatccaaacagtaattagccgttggacattgagcaacaaccaaccatggtttgacaaaccacctgtcgcagtaagtcagaccactaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  42158703 cttttggtttgtccatccaaacagtaattagccgttggacattgaccaacaaccaaccatggtttgacaaaccacctatcgtagtaagtcagaccactaa 42158802  T
Q  201 tttctaagaaatctatgtggtttgacgaaccaaagtatatatggtccgtccaaccactagttggttgttcgatataaaatccaaat 286  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  42158803 tttctaagaaatctatgtggtttgacgaaccacagtatatatggtccgttcaaccactagttggttgtttgatataaaatccaaat 42158888  T

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