View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4405_low_36 (Length: 257)
Name: NF4405_low_36
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 6223507 - 6223745
Alignment:
| Q |
1 |
aatcctgcatttggtacattagtcaccattcgatcaacattagatggtctaaaaacatacannnnnnnnagttttaatattaaaaaaccgagcttgaatt |
100 |
Q |
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| T |
6223507 |
aatcctgcatttggaacattagtcaccattcgatcaacattagatggtctaaaaacatacattttttttagttttaatattaaaaaaccgagcttgaatt |
6223606 |
T |
|
| Q |
101 |
ccgatcttttgatcatgacttagcggtaactgatgtcccgaactcgtgaatgcgaaaaaataccgattatattcatcggtggatttatcatttattgagc |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6223607 |
ccgatcttttgatcataacttagcggtaactgatgtcccgaactcgtgaatgcgaaaaaataccgactatattcatcggtggatttatcatttattgagc |
6223706 |
T |
|
| Q |
201 |
aaacaggattgtgctttggcatctccataactatgcaaa |
239 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |
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| T |
6223707 |
aaacaggattgtgctttggcatctgcataactatgcaaa |
6223745 |
T |
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