View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4405_low_37 (Length: 255)

Name: NF4405_low_37
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4405_low_37
NF4405_low_37
[»] chr4 (3 HSPs)
chr4 (98-242)||(28281350-28281494)
chr4 (98-216)||(28289458-28289576)
chr4 (98-150)||(28300520-28300572)
[»] chr7 (1 HSPs)
chr7 (101-180)||(24729553-24729632)


Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 98 - 242
Target Start/End: Original strand, 28281350 - 28281494
Alignment:
Q  98 aggaaccttattctggacctggtcaagcaatggggctatcactctcggttcctcgaggaatccaatttccatccactttgaagaatgtacttaaggaggt 197  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28281350 aggaaccttattctggacctggtcaagcaatggggctatcattctcggttcctcgaggagtccaatttccatccactttgaagaatgtacttaaggaggt 28281449  T
Q  198 taagaatgatcttgattgtaaggttctacgtcatggcaatcttga 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28281450 taagaatgatcttgattgtaaggttctacgtcatggcaatcttga 28281494  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 216
Target Start/End: Original strand, 28289458 - 28289576
Alignment:
Q  98 aggaaccttattctggacctggtcaagcaatggggctatcactctcggttcctcgaggaatccaatttccatccactttgaagaatgtacttaaggaggt 197  Q
    |||||||||||  |||||||||||||||||||||||| |||   ||||||||    ||| |  || ||||||||| ||||||||||||| |||||||| |    
T  28289458 aggaaccttatgatggacctggtcaagcaatggggctttcatattcggttccggagggagttaaagttccatccattttgaagaatgtatttaaggagct 28289557  T
Q  198 taagaatgatcttgattgt 216  Q
    |||||| ||| ||| ||||    
T  28289558 taagaaagatattggttgt 28289576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 28300520 - 28300572
Alignment:
Q  98 aggaaccttattctggacctggtcaagcaatggggctatcactctcggttcct 150  Q
    |||| ||||||  |||||||||||||||||||||||| ||| |||||||||||    
T  28300520 aggacccttatcatggacctggtcaagcaatggggctttcattctcggttcct 28300572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 24729553 - 24729632
Alignment:
Q  101 aaccttattctggacctggtcaagcaatggggctatcactctcggttcctcgaggaatccaatttccatccactttgaag 180  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||  ||||||||||| |||||||    
T  24729553 aaccttattctggacctggtgaagcaatggggctatcattctcggttccttgaggagtcagatttccatccattttgaag 24729632  T

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