View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4405_low_4 (Length: 736)
Name: NF4405_low_4
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 236 - 548
Target Start/End: Complemental strand, 42518444 - 42518135
Alignment:
| Q |
236 |
ctcatcaaattaattaattgaaatctaaacaatcgtgtacctatgaaaaaatcttaacaatctaaggaatgataatatcaacaaaatggaaccaataata |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42518444 |
ctcatcaaattaattaattgaaatctaaacaatcgtgtacctatgaaaaaatcttaacaatctaaggaatgataatatcaacaaaatggaaccaata--- |
42518348 |
T |
|
| Q |
336 |
gtccaaactctaaagggttcattttctgatgcatcaagagggatgtaaagaaaagccaaatcctccctaaagttctttttattatcatatatagtttggt |
435 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42518347 |
gtccaaactctaaagggttcattttctgatgcatcaagagggatgtaaagaaaagacaaatcctccctaaagttctttttattatcatatatagtttggt |
42518248 |
T |
|
| Q |
436 |
gaaaaatattttaaacttgaaataagtctctcaattttctatgatatatcgcaaattaactgtagatgagattaaatttaaaacctagagaataatggaa |
535 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42518247 |
gaaaaatattttaaacttgaaataaggctctcaattttcaatgatagatcgcaaattaactgtagatgagattaaatttaaaacccagagaataatggaa |
42518148 |
T |
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| Q |
536 |
cacatagcttctg |
548 |
Q |
| |
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||||||||||||| |
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| T |
42518147 |
cacatagcttctg |
42518135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 42518810 - 42518666
Alignment:
| Q |
5 |
gatggacatcatcaacttttgaataatttgatattgtagaaattgatgctagttgagataaatttttactataatttacgataaattgagtagtaacgta |
104 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42518810 |
gatggacataatcaacttttgaataatttgatattgtagaaattgatgctagttgagatagatttttactataatttacgataaattgagtagtaacgta |
42518711 |
T |
|
| Q |
105 |
actagtaagtaggctgatgatgtacttttacaacatttgttttct |
149 |
Q |
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| T |
42518710 |
aatagtaagtaggctgatgatgtacttttacaacatttgttttct |
42518666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 182 - 537
Target Start/End: Complemental strand, 42509087 - 42508724
Alignment:
| Q |
182 |
cacaagagagaattaatgtgtcaaattaagtgtgcataatgaa-----------ttagtataatactcatcaaattaattaattgaaatctaaacaatcg |
270 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||| || | ||||||||||||||||||||||||||||||||||| |
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| T |
42509087 |
cacaagagagaattaatgtgtcgaattaagtgtgcataatgaaattatactacattagt-tatttctcatcaaattaattaattgaaatctaaacaatcg |
42508989 |
T |
|
| Q |
271 |
tgtacctatgaaaaaa------tcttaacaatctaaggaatgataatatcaacaaaatggaaccaataatagtccaaactctaaagggttcattttctga |
364 |
Q |
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||||| || |||||| |||||||||| |||||||||||||||||||||||||||| |||| | | ||||| |||||||||||||| |
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| T |
42508988 |
tgtacttaaaaaaaaaaaaaaatcttaacaatataaggaatgataatatcaacaaaatggagccaacagt----------ctaaatggttcattttctga |
42508899 |
T |
|
| Q |
365 |
tgcatcaagagggatgtaaagaaaagccaaatcctccctaaagttctttttattatcatatatagtttggtgaaaaatattttaaacttgaaataagtct |
464 |
Q |
| |
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| |||||||| |||||||| |||||||||||||||||| ||||||||||||| |||||| ||||| ||| ||||||||||||| ||||| ||| ||| | |
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| T |
42508898 |
tacatcaagaaggatgtaatgaaaagccaaatcctcccaaaagttctttttactatcatgtatag-ttgatgaaaaatatttttaacttaaaacaag--t |
42508802 |
T |
|
| Q |
465 |
ctcaattttctatgatatat----cgcaaattaactgtagatgagattaaatttaaaacctagag-aataatggaaca |
537 |
Q |
| |
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||||||||| ||||||| || | ||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42508801 |
ctcaattttatatgatagattgtatgtaaattaaaggtagatgagattaaatttaaaacctagagaaataatggaaca |
42508724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 619 - 717
Target Start/End: Complemental strand, 42518095 - 42517997
Alignment:
| Q |
619 |
cataagacgatccataagtttcatgcaactaattattaatagacaattttaagtatatcattgagaaaaatgagataatatatagttgagatagactca |
717 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42518095 |
cataagacgatccataagtttcatgcaactaattattaaaagacaattttaagtatatgattgagaaaaatgagataatatatagttgagatagactca |
42517997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 581 - 717
Target Start/End: Complemental strand, 42508567 - 42508430
Alignment:
| Q |
581 |
tttgtatatcaatcttaataaagtaaatggatgtcttccataagacgatccataagtttcatgcaacta--attattaatagacaattttaagtatatca |
678 |
Q |
| |
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|||||||| |||||||| | |||||||| |||||||| ||||||||||||||||||||||||||| ||| |||||||| |||||| ||| ||||||| | |
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| T |
42508567 |
tttgtataacaatcttattgaagtaaatagatgtcttgcataagacgatccataagtttcatgcatctaatattattaagagacaa-tttgagtatatta |
42508469 |
T |
|
| Q |
679 |
ttgagaaaaatgagataatatatagttgagatagactca |
717 |
Q |
| |
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|| |||||||| ||||||| | |||||||| |||||||| |
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| T |
42508468 |
tttagaaaaattagataatgtgtagttgagttagactca |
42508430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 565 - 717
Target Start/End: Complemental strand, 42524689 - 42524536
Alignment:
| Q |
565 |
attcaataagagataatttgtatatcaatcttaataaagtaaatggatgtcttccataagacgatccataagtttcatgcaacta--attattaatagac |
662 |
Q |
| |
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||||||||||||| |||||||| |||||||| | |||||||| |||||||| ||||||||||||||||| ||||||||| || |||||||| |||| |
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| T |
42524689 |
attcaataagagacggtttgtataacaatcttattgaagtaaatagatgtcttgcataagacgatccataaatttcatgcatttaatattattaagagac |
42524590 |
T |
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| Q |
663 |
aattttaagtatatcattgagaaaaatgagataatatatagttgagatagactca |
717 |
Q |
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|| ||| ||||||| ||| |||||||| ||||||| | |||||||| |||||||| |
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| T |
42524589 |
aa-tttgagtatattatttagaaaaattagataatgtgtagttgagttagactca |
42524536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 42509411 - 42509329
Alignment:
| Q |
21 |
ttttgaataatttgatattgtagaaattgatgctagttgagata-aattt--ttactataatttacgataaattgagtagtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| ||||||||||| |
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| T |
42509411 |
ttttgaataatttgatattgtagaaattgatgctagttgagatagaattttattactataatttgcgataatttgagtagtaa |
42509329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 42518533 - 42518478
Alignment:
| Q |
182 |
cacaagagagaattaatgtgtcaaattaagtgtgcataatgaattagtataatact |
237 |
Q |
| |
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| T |
42518533 |
cacaagagagaattaatgtgtcaaattaagtgtgcataatgaattagtataatact |
42518478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 42509305 - 42509237
Alignment:
| Q |
122 |
tgatgtacttttacaacatttgttttcttaaacat-cagatactcgt---agagtacaactcaacacaa |
186 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| | || |||||| ||||||||||||||||||| |
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| T |
42509305 |
tgatgtacttttacaacgtttgttttcttaaacatactgaaactcgtagaagagtacaactcaacacaa |
42509237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 497 - 537
Target Start/End: Complemental strand, 42524869 - 42524828
Alignment:
| Q |
497 |
gtagatgagattaaatttaaaacctagag-aataatggaaca |
537 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
42524869 |
gtagatgagattaaatttaaaacctagagaaataatggaaca |
42524828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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