View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4405_low_42 (Length: 229)

Name: NF4405_low_42
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4405_low_42
NF4405_low_42
[»] chr8 (14 HSPs)
chr8 (3-220)||(44547311-44547528)
chr8 (1-126)||(44547645-44547770)
chr8 (1-162)||(44547447-44547608)
chr8 (1-126)||(44547849-44547974)
chr8 (31-126)||(44548089-44548184)
chr8 (59-162)||(44547525-44547628)
chr8 (3-162)||(44547687-44547852)
chr8 (3-162)||(44547891-44548050)
chr8 (64-162)||(44547969-44548067)
chr8 (46-126)||(44547807-44547887)
chr8 (46-126)||(44548047-44548127)
chr8 (79-162)||(44548167-44548250)
chr8 (45-126)||(44547603-44547684)
chr8 (3-77)||(44548174-44548248)


Alignment Details
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 44547528 - 44547311
Alignment:
Q  3 ttgaggttgagtctgtggtgcaacaaccaccctttctagctcttgagtttgaggaccagccaccaccattcctagatcttgaggttgagcttgaggaccc 102  Q
    ||||||||||| ||| || ||||  ||||||||| |||||||||||  |||||||||||| |||||| || |||| |||||||||||||| ||||||||     
T  44547528 ttgaggttgagcctgaggagcaatcaccacccttcctagctcttgatcttgaggaccagctaccaccctttctagctcttgaggttgagcctgaggacca 44547429  T
Q  103 gccaccacccttcctagctcttgatcttgaggaccagctaccaccctttctagctcttgaacctgaggaccaacctccacttgcattgtagcttcaccga 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44547428 gccaccacccttcctagctcttgatcttgaggaccagctaccaccctttctagctcttgaacctgaggaccaatctccacttgcattgtagcttcaccga 44547329  T
Q  203 aatctgttacagtattat 220  Q
    ||||||||| ||||||||    
T  44547328 aatctgttatagtattat 44547311  T

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Target: chr8; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 44547770 - 44547645
Alignment:
Q  1 ttttgaggttgagtctgtggtgcaacaaccaccctttctagctcttgagtttgaggaccagccaccaccattcctagatcttgaggttgagcttgaggac 100  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44547770 ttttgaggttgagtctgtggagcaacaaccacccttcctagctcttgagtctgaggaccagccaccaccattcctagctcttgaggttgagcttgaggac 44547671  T
Q  101 ccgccaccacccttcctagctcttga 126  Q
    ||||||||||||||||||||| ||||    
T  44547670 ccgccaccacccttcctagcttttga 44547645  T

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Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 44547608 - 44547447
Alignment:
Q  1 ttttgaggttgagtctgtggtgcaacaaccaccctttctagctcttgagtttgaggaccagccaccaccattcctagatcttgaggttgagcttgaggac 100  Q
    ||||||||||||  |||||| ||| |||||| |||| ||||||||||||  ||||||||||| |||||| ||||||| |||||||||||||| ||||||     
T  44547608 ttttgaggttgatcctgtggagcagcaaccatccttcctagctcttgagcatgaggaccagctaccacccttcctagctcttgaggttgagcctgaggag 44547509  T
Q  101 ccgccaccacccttcctagctcttgatcttgaggaccagctaccaccctttctagctcttga 162  Q
    |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44547508 caatcaccacccttcctagctcttgatcttgaggaccagctaccaccctttctagctcttga 44547447  T

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Target: chr8; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 44547974 - 44547849
Alignment:
Q  1 ttttgaggttgagtctgtggtgcaacaaccaccctttctagctcttgagtttgaggaccagccaccaccattcctagatcttgaggttgagcttgaggac 100  Q
    ||||||||||| |||||||| ||| |||||||||||  ||||| |||||| |||| ||||||||||||||||||||| |||||||| |||||||||||||    
T  44547974 ttttgaggttgggtctgtggagcagcaaccacccttcttagcttttgagtctgagaaccagccaccaccattcctagctcttgaggctgagcttgaggac 44547875  T
Q  101 ccgccaccacccttcctagctcttga 126  Q
    | ||||||||||||||||||||||||    
T  44547874 cagccaccacccttcctagctcttga 44547849  T

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Target: chr8; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 44548184 - 44548089
Alignment:
Q  31 accctttctagctcttgagtttgaggaccagccaccaccattcctagatcttgaggttgagcttgaggacccgccaccacccttcctagctcttga 126  Q
    |||||| |||||| |||||| |||| ||||| ||||||||||||||  |||||||| |||||||||||||| ||||||||||||||||||| ||||    
T  44548184 acccttcctagcttttgagtctgagaaccagtcaccaccattcctaactcttgaggctgagcttgaggaccagccaccacccttcctagcttttga 44548089  T

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Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 162
Target Start/End: Complemental strand, 44547628 - 44547525
Alignment:
Q  59 cagccaccaccattcctagatcttgaggttgagcttgaggacccgccaccacccttcctagctcttgatcttgaggaccagctaccaccctttctagctc 158  Q
    |||||| |||| ||||||| | |||||||||| | || ||| | || |||| |||||||||||||||| | ||||||||||||||||||||| |||||||    
T  44547628 cagccatcacccttcctagcttttgaggttgatcctgtggagcagcaaccatccttcctagctcttgagcatgaggaccagctaccacccttcctagctc 44547529  T
Q  159 ttga 162  Q
    ||||    
T  44547528 ttga 44547525  T

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Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 162
Target Start/End: Complemental strand, 44547852 - 44547687
Alignment:
Q  3 ttgaggttgagtctgtggtgcaacaaccaccctttctagctcttgagt------ttgaggaccagccaccaccattcctagatcttgaggttgagcttga 96  Q
    |||||||||||  ||||| ||||| ||||| ||||||||||||||||       |||||||| ||| |||||| ||||||| | |||||||||||  ||     
T  44547852 ttgaggttgagcatgtggagcaaccaccactctttctagctcttgagcctgagcttgaggactagcaaccacccttcctagcttttgaggttgagtctgt 44547753  T
Q  97 ggacccgccaccacccttcctagctcttgatcttgaggaccagctaccaccctttctagctcttga 162  Q
    ||| |  | |||||||||||||||||||||   ||||||||||| |||||| || |||||||||||    
T  44547752 ggagcaacaaccacccttcctagctcttgagtctgaggaccagccaccaccattcctagctcttga 44547687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 162
Target Start/End: Complemental strand, 44548050 - 44547891
Alignment:
Q  3 ttgaggttgagtctgtggtgcaacaaccaccctttctagctcttgagtttgaggaccagccaccaccattcctagatcttgaggttgagcttgaggaccc 102  Q
    |||||||||||  ||||| | | | ||||||||| ||| ||||||||  |||||||||||||||||| ||||||| | ||||||||| |  || ||| |     
T  44548050 ttgaggttgagcatgtggagaagccaccacccttcctatctcttgagcctgaggaccagccaccacccttcctagcttttgaggttgggtctgtggagca 44547951  T
Q  103 gccaccacccttcctagctcttgatcttgaggaccagctaccaccctttctagctcttga 162  Q
    || |||||||||| ||||| ||||   |||| |||||| |||||| || |||||||||||    
T  44547950 gcaaccacccttcttagcttttgagtctgagaaccagccaccaccattcctagctcttga 44547891  T

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Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 162
Target Start/End: Complemental strand, 44548067 - 44547969
Alignment:
Q  64 accaccattcctagatcttgaggttgagcttgaggacccgccaccacccttcctagctcttgatcttgaggaccagctaccaccctttctagctcttga 162  Q
    |||||| |||| || |||||||||||||| || |||   |||||||||||||||| ||||||| | ||||||||||| ||||||||| |||||| ||||    
T  44548067 accacccttcccagctcttgaggttgagcatgtggagaagccaccacccttcctatctcttgagcctgaggaccagccaccacccttcctagcttttga 44547969  T

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Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 44547887 - 44547807
Alignment:
Q  46 tgagtttgaggaccagccaccaccattcctagatcttgaggttgagcttgaggacccgccaccacccttcctagctcttga 126  Q
    |||| ||||||||||||||||||| ||||||| |||||||||||||| || ||| |  ||||||| ||| |||||||||||    
T  44547887 tgagcttgaggaccagccaccacccttcctagctcttgaggttgagcatgtggagcaaccaccactctttctagctcttga 44547807  T

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Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 44548127 - 44548047
Alignment:
Q  46 tgagtttgaggaccagccaccaccattcctagatcttgaggttgagcttgaggacccgccaccacccttcctagctcttga 126  Q
    |||| ||||||||||||||||||| ||||||| | |||||||||||| || |||   || ||||||||||| |||||||||    
T  44548127 tgagcttgaggaccagccaccacccttcctagcttttgaggttgagcctgtggagtagcaaccacccttcccagctcttga 44548047  T

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Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 44548250 - 44548167
Alignment:
Q  79 tcttgaggttgagcttgaggacccgccaccacccttcctagctcttgatcttgaggaccagctaccaccctttctagctcttga 162  Q
    |||||||| |||| ||| ||| | ||||||| |||||||||||||||| | ||||||||||| || |||||| |||||| ||||    
T  44548250 tcttgaggctgagtttgtggagcagccaccatccttcctagctcttgagcctgaggaccagccactacccttcctagcttttga 44548167  T

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Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 44547684 - 44547603
Alignment:
Q  45 ttgagtttgaggaccagccaccaccattcctagatcttgaggttgagcttgaggacccgccaccacccttcctagctcttga 126  Q
    ||||| ||||||||| ||||||||| ||||||| | |||||| ||||| || ||| | |||| |||||||||||||| ||||    
T  44547684 ttgagcttgaggacccgccaccacccttcctagcttttgaggctgagcatgtggagcagccatcacccttcctagcttttga 44547603  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 44548248 - 44548174
Alignment:
Q  3 ttgaggttgagtctgtggtgcaacaaccaccctttctagctcttgagtttgaggaccagccaccaccattcctag 77  Q
    |||||| ||||| ||||| ||| | |||| |||| ||||||||||||  |||||||||||||| ||| |||||||    
T  44548248 ttgaggctgagtttgtggagcagccaccatccttcctagctcttgagcctgaggaccagccactacccttcctag 44548174  T

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