View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4405_low_7 (Length: 544)

Name: NF4405_low_7
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4405_low_7
NF4405_low_7
[»] chr7 (6 HSPs)
chr7 (101-526)||(9020601-9021016)
chr7 (128-525)||(9012600-9012972)
chr7 (315-373)||(7485038-7485096)
chr7 (201-239)||(8869237-8869275)
chr7 (313-373)||(7499447-7499507)
chr7 (45-88)||(32315251-32315295)
[»] chr2 (1 HSPs)
chr2 (43-88)||(23756738-23756784)
[»] chr8 (1 HSPs)
chr8 (43-88)||(11771733-11771778)
[»] chr4 (1 HSPs)
chr4 (43-88)||(51458704-51458749)
[»] chr3 (3 HSPs)
chr3 (43-76)||(48531304-48531337)
chr3 (208-264)||(2022384-2022440)
chr3 (202-249)||(3139714-3139762)


Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 101 - 526
Target Start/End: Complemental strand, 9021016 - 9020601
Alignment:
Q  101 atatagacatattattcattnnnnnnngcaaagttaaatttaatcccaaattatgaatcaatcggtacgattttcttcaccatattcagattttctatcc 200  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9021016 atatagacatattattcattaaaaaaagcaaagttaaatttaatcccaaattatgaatcaatcggtacgattttcttcaccatattcggattttctatcc 9020917  T
Q  201 atattcttaaagatatttgcattgactaaaatattttttaaataaataaactttcttaaaagctaatctttcctttaatgaagacaatattacatcgcca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  9020916 atattcttaaagatatttgcattgactaaaatattttttaaataaataaactttcttaaaagctaatctttccattaatgaagacaaaattacatcgcca 9020817  T
Q  301 aattaggaagaaagagatattcatgcacaaatcaatcggtgtaatattttttctcacatcgtttcaaatttttaatccatattcgtaaagatatttcgat 400  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  9020816 aattaggaagcaagagatattcatgcacaaatcaatcggtgtaatattttttctaacatcgtttcaaatttttaatccatattcataaagatatttcgat 9020717  T
Q  401 ccttattcctaaagaacatatttgcattgactcaaatattttctatataataatataattaacccttctgataagcttctcatcacatcaaaaccacata 500  Q
    ||||| ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| |||||||||  |||    
T  9020716 cctta-tcctaaagaacatatttgcattgactcaaatattttct--------atataattaacccttctgataagcttctcatcatatcaaaacc-tata 9020627  T
Q  501 ggcatagtttgcgatacttactttgt 526  Q
    ||||||||||||||||||||||||||    
T  9020626 ggcatagtttgcgatacttactttgt 9020601  T

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Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 128 - 525
Target Start/End: Complemental strand, 9012972 - 9012600
Alignment:
Q  128 gcaaagttaaatttaatcccaaattatgaatcaatcggtacgattttcttcaccatat----tcagattttctatccatattcttaaagatatttgcatt 223  Q
    |||| |||||||| ||| ||| ||||||||||||||||||||||||||||| ||||||    |||| |||||  ||||||||||||||||||| | ||||    
T  9012972 gcaaggttaaattaaattccatattatgaatcaatcggtacgattttcttccccatatcgtttcagcttttcattccatattcttaaagatatctacatt 9012873  T
Q  224 gactaaaatattttttaaataaataaactttcttaaaagctaatctttcctttaatgaagacaatattacatcgccaaattaggaagaaagagatattca 323  Q
     ||| | ||||||||||||||||||| | || ||||||||| || ||||| |||||||||||||  ||||||||||||||                        
T  9012872 aacttagatattttttaaataaataagcctttttaaaagcttatatttccattaatgaagacaaacttacatcgccaaat-------------------- 9012793  T
Q  324 tgcacaaatcaatcggtgtaatattttttctcacatcgtttcaaatttttaatccatattcgtaaagatatttcgatccttattcctaaagaacatattt 423  Q
     | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||    
T  9012792 -gtacaaatcaatcggtgtaatattttttctcacgtcgtttcaaatttttaatccatattcataaagatatttcgatcctttttcctaaagaacacattt 9012694  T
Q  424 gcattgactcaaatattttctatataataatataattaacccttctgataagcttctcatcacatcaaaaccacataggcatagtttgcgatacttactt 523  Q
    ||||| || |||||||||||||||        |||| ||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  9012693 gcattaacacaaatattttctata--------taatgaactcttctaataagcttctcatcacatcaaaaccacaaagacatagtttgcgatacttactt 9012602  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 7485096 - 7485038
Alignment:
Q  315 agatattcatgcacaaatcaatcggtgtaatattttttctcacatcgtttcaaattttt 373  Q
    ||||||||||||||||||||| ||||| |||||| ||| ||||| ||| ||| ||||||    
T  7485096 agatattcatgcacaaatcaaacggtgcaatattatttttcacaacgtatcagattttt 7485038  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 8869275 - 8869237
Alignment:
Q  201 atattcttaaagatatttgcattgactaaaatatttttt 239  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  8869275 atatgcttaaagatatttgcattgactcaaatatttttt 8869237  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 373
Target Start/End: Complemental strand, 7499507 - 7499447
Alignment:
Q  313 agagatattcatgcacaaatcaatcggtgtaatattttttctcacatcgtttcaaattttt 373  Q
    ||||||||||||||||||||||| ||||| | |||| ||| ||||| ||| ||| ||||||    
T  7499507 agagatattcatgcacaaatcaaacggtgcagtattatttttcacaacgtatcatattttt 7499447  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 32315251 - 32315295
Alignment:
Q  45 tacataaaatatgcaaggttc-gggttcgaaccttgaccaccaca 88  Q
    ||||||| ||||||||||||| ||||||||||| |||||||||||    
T  32315251 tacataatatatgcaaggttcagggttcgaaccctgaccaccaca 32315295  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 23756738 - 23756784
Alignment:
Q  43 aatacataaaatatgcaaggttcgg-gttcgaaccttgaccaccaca 88  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||    
T  23756738 aatacataaaatatgcaaggttcggagttcgaaccttgatcaccaca 23756784  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 11771733 - 11771778
Alignment:
Q  43 aatacataaaatatgcaaggttcgggttcgaaccttgaccaccaca 88  Q
    ||||||||| ||||||||||| || |||||||||| ||||||||||    
T  11771733 aatacataatatatgcaaggtccgagttcgaacctcgaccaccaca 11771778  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 51458704 - 51458749
Alignment:
Q  43 aatacataaaatatgcaaggttcgggttcgaaccttgaccaccaca 88  Q
    ||||||||||||||||||||| |||||||||| | || ||||||||    
T  51458704 aatacataaaatatgcaaggtccgggttcgaatcctggccaccaca 51458749  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 48531304 - 48531337
Alignment:
Q  43 aatacataaaatatgcaaggttcgggttcgaacc 76  Q
    ||||||||||||||||||||||||||||| ||||    
T  48531304 aatacataaaatatgcaaggttcgggttcaaacc 48531337  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 2022384 - 2022440
Alignment:
Q  208 taaagatatttgcattgactaaaatattttttaaataaataaactttcttaaaagct 264  Q
    ||||||||||| |||| ||| |||||||||| |||||||||| | |||||| |||||    
T  2022384 taaagatatttacattaactcaaatatttttaaaataaataagccttcttataagct 2022440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 249
Target Start/End: Complemental strand, 3139762 - 3139714
Alignment:
Q  202 tattcttaaagatatttgcattgacta-aaatattttttaaataaataa 249  Q
    ||||| |||||||||||||||| |||  |||||||||||||||||||||    
T  3139762 tattcataaagatatttgcattaactctaaatattttttaaataaataa 3139714  T

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