View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4405_low_8 (Length: 535)
Name: NF4405_low_8
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 22 - 455
Target Start/End: Complemental strand, 38389905 - 38389467
Alignment:
| Q |
22 |
gcgcaattcattttactatatcttgtaactttgtcatgtaggtctgaacaatgtggtttttcaatttaagtaactactaataattcatgcaaatccatta |
121 |
Q |
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| T |
38389905 |
gcgcaattcattttactatatcttctaactttgtcatgtaggtctgaacaatgtggtttttcaatttaagtaactactaataattcataaaaatccattg |
38389806 |
T |
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| Q |
122 |
ctcatgtggttttactatatcttcaaacttatagatttttctaactaggtagcaaattcattagcaaagcttattccaacatcagtaagctaaaatgcct |
221 |
Q |
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| T |
38389805 |
ctcatgtggttttactatatcttctaacttttagatttttctaactaggtagcaaattcattagcaaagcttattccaacatcagtaagctaaaatgcct |
38389706 |
T |
|
| Q |
222 |
cttgcaagctcattaggtgtcacatacctataatatttttcattttctgcccaa----aattgctcctgatctttcattgatgtgaccaacaaacaatac |
317 |
Q |
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| T |
38389705 |
c-tgcaaactctttaggtgtcacatacctataagatttttcattttccgcccaaaattaattgctcctgatctttcattgatgtgaccaacaaacaatac |
38389607 |
T |
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| Q |
318 |
cacataataattaataaccaaaaattaaactattaaaactcattatattctaaccatg--tagaaataagatcataatgttatatacttacttgttgtag |
415 |
Q |
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| T |
38389606 |
cacataataattaataaccaaaaattaaactattaaaactcattatattctaaccatgtatagaaataagatcataatgttatatacttacttgttgtag |
38389507 |
T |
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| Q |
416 |
aaaatctgccacaacttttctctcgaggcatacaaaaccc |
455 |
Q |
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| T |
38389506 |
aaaatctgccacaacttttctctcaaggcatacaaaaccc |
38389467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 38391171 - 38391275
Alignment:
| Q |
25 |
caattcattttactatatcttgtaactttgtcatgtaggtctgaacaatgtggtttttcaatttaagtaactactaataattcatgcaaatccattactc |
124 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38391171 |
caattcattttactatatcttcaaactttgtcatgtaggtttgaataatgtagtttttcaatttaagtaactactaataattcatacaaatccattactc |
38391270 |
T |
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| Q |
125 |
atgtg |
129 |
Q |
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||||| |
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| T |
38391271 |
atgtg |
38391275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 248 - 375
Target Start/End: Complemental strand, 38391032 - 38390913
Alignment:
| Q |
248 |
cctataatatttttcattttctgcccaaaattgctcctgatctttcattgatgtgaccaacaaacaataccacataataattaataaccaaaaattaaac |
347 |
Q |
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| T |
38391032 |
cctataaggtttttcattttccgcccaatattgttcctgatctttcattgatttgacc----tacaataccacataa----taataacaaaaaattaaac |
38390941 |
T |
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| Q |
348 |
tattaaaactcattatattctaaccatg |
375 |
Q |
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| T |
38390940 |
tattaaaactcattatgttctaaccatg |
38390913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 235 - 399
Target Start/End: Original strand, 38390070 - 38390226
Alignment:
| Q |
235 |
taggtgtcacatacctataatatttttcattttctgcccaaaattgctcctgatctttcattgatgtgaccaacaaacaataccacataataattaataa |
334 |
Q |
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||||||||| | || ||||| |||||||||| | || ||| |||||||||||||||| ||| |||||| |||| ||||||||| ||||||| |
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| T |
38390070 |
taggtgtcaaaaacatataaggtttttcatttaccgctcaatattgctcctgatcttttattaatgtgagttacaa----taccacata----ttaataa |
38390161 |
T |
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| Q |
335 |
ccaaaaattaaactattaaaactcattatattctaaccatgtagaaataagatcataatgttata |
399 |
Q |
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| T |
38390162 |
ccaaaaatgaaactattaaaactcattatcttctaatcatgtaaaaagaagatcataacgttata |
38390226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 472 - 526
Target Start/End: Complemental strand, 38389440 - 38389387
Alignment:
| Q |
472 |
caagcacatgctcacacagactgtgtacacaatatgtccctcaagagagtataat |
526 |
Q |
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| T |
38389440 |
caagcacatgctcacacagactgtgtacacaatatgtccctc-agagagtataat |
38389387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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