View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4405_low_9 (Length: 523)
Name: NF4405_low_9
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 36 - 444
Target Start/End: Complemental strand, 37156299 - 37155899
Alignment:
| Q |
36 |
attttaatataattacaaatgtcgatgtcgtgtgagtgttagacaccaccgaggctaaagtttattaagcacttgaacacaattttttatttcaatttaa |
135 |
Q |
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| T |
37156299 |
attttattgtaattacaaatgtggatgtcgtgtcgatgttagacaccaccgaagttaaagtttattaagcacttgaacacaatttgttatttcaatataa |
37156200 |
T |
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| Q |
136 |
aatatgttattattttctagacaaattaaaatttcctagttaggttatgtttaaaaagaaattccaaattcaagaaggttgcccnnnnnnnnngctcctc |
235 |
Q |
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| T |
37156199 |
aatatgttattattttctagacaaattaaaatttcctagttaggttatgtttaaaaagaaattccaaattcaagaaggttgcccaaaaaaaaagctcctc |
37156100 |
T |
|
| Q |
236 |
aaaaaagttgcatgcatggctatatattaatgttctgccggatctaaaaatagatcttccatactctattctttcctcgtcatttccgcatctaatttga |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37156099 |
aaaaaagttgcatgcatggctatatattaatgttctgccggatctaaaaatagatcttccatactctattttttcctcgtcatttccgcatctaatttga |
37156000 |
T |
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| Q |
336 |
caaatgcatagttgttaagcataagccacatgcaatttcatacgtgagaatcaaacactacatgttggtgacattgcatgggaagtacgtaaaactataa |
435 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37155999 |
caaa--------tgataagcataagccacatgcaatttcatacgtgagaatcaaacactacatgttggtgacattgcatgggaagtacgtaaaactataa |
37155908 |
T |
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| Q |
436 |
ttatctgct |
444 |
Q |
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| T |
37155907 |
ttatctgct |
37155899 |
T |
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