View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4406-Insertion-1 (Length: 1062)

Name: NF4406-Insertion-1
Description: NF4406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4406-Insertion-1
NF4406-Insertion-1
[»] chr8 (9 HSPs)
chr8 (8-363)||(39196272-39196627)
chr8 (288-360)||(44656294-44656366)
chr8 (307-359)||(16911042-16911094)
chr8 (311-360)||(22632968-22633017)
chr8 (317-362)||(42094006-42094051)
chr8 (312-359)||(4402288-4402335)
chr8 (311-358)||(22632323-22632370)
chr8 (321-359)||(9277792-9277830)
chr8 (312-365)||(26847091-26847144)
[»] chr2 (7 HSPs)
chr2 (30-359)||(21921593-21921927)
chr2 (288-359)||(30201965-30202036)
chr2 (312-359)||(1141300-1141347)
chr2 (309-357)||(21922271-21922319)
chr2 (311-362)||(29388948-29388999)
chr2 (312-362)||(29387421-29387471)
chr2 (322-359)||(19275961-19275998)
[»] chr6 (12 HSPs)
chr6 (418-793)||(8225712-8226083)
chr6 (790-1048)||(8213978-8214240)
chr6 (790-1048)||(8225429-8225691)
chr6 (360-612)||(8214379-8214619)
chr6 (360-584)||(8236589-8236813)
chr6 (694-793)||(8214261-8214360)
chr6 (790-912)||(8236205-8236327)
chr6 (586-785)||(8236356-8236552)
chr6 (361-430)||(8233450-8233519)
chr6 (360-414)||(8226074-8226128)
chr6 (312-362)||(34423572-34423622)
chr6 (312-360)||(34423373-34423421)
[»] chr7 (22 HSPs)
chr7 (30-161)||(38644843-38644973)
chr7 (288-360)||(44120357-44120429)
chr7 (287-355)||(38648373-38648441)
chr7 (288-359)||(44121059-44121131)
chr7 (288-359)||(8755094-8755165)
chr7 (288-357)||(8754175-8754244)
chr7 (311-360)||(28007156-28007205)
chr7 (301-358)||(38643467-38643524)
chr7 (312-360)||(35892304-35892352)
chr7 (312-359)||(28007814-28007861)
chr7 (311-352)||(34807935-34807976)
chr7 (311-355)||(1511851-1511895)
chr7 (312-359)||(3314955-3315002)
chr7 (305-360)||(18568366-18568421)
chr7 (305-360)||(18633556-18633611)
chr7 (305-360)||(18646268-18646323)
chr7 (305-360)||(18648853-18648908)
chr7 (313-363)||(1512562-1512612)
chr7 (309-359)||(36791587-36791637)
chr7 (318-359)||(3315470-3315511)
chr7 (305-358)||(18591131-18591184)
chr7 (305-358)||(18620501-18620554)
[»] chr4 (14 HSPs)
chr4 (142-275)||(34047332-34047467)
chr4 (301-360)||(6258136-6258195)
chr4 (288-360)||(6256762-6256834)
chr4 (288-359)||(36249124-36249195)
chr4 (36-118)||(34047468-34047550)
chr4 (301-359)||(36248399-36248457)
chr4 (312-361)||(14527577-14527626)
chr4 (312-357)||(38519188-38519233)
chr4 (311-359)||(24666129-24666177)
chr4 (311-359)||(25725808-25725856)
chr4 (311-355)||(36253491-36253535)
chr4 (312-363)||(13925650-13925701)
chr4 (313-359)||(21527027-21527073)
chr4 (313-355)||(26393400-26393442)
[»] chr3 (13 HSPs)
chr3 (288-360)||(52924410-52924482)
chr3 (301-353)||(34869061-34869114)
chr3 (311-359)||(4706956-4707004)
chr3 (311-355)||(33762688-33762732)
chr3 (300-360)||(52923720-52923779)
chr3 (312-359)||(3584005-3584052)
chr3 (312-359)||(24515014-24515061)
chr3 (311-359)||(20807937-20807985)
chr3 (311-359)||(24511994-24512042)
chr3 (288-335)||(9716066-9716113)
chr3 (313-359)||(33761970-33762016)
chr3 (317-359)||(47571196-47571238)
chr3 (317-359)||(49349676-49349718)
[»] chr5 (5 HSPs)
chr5 (288-359)||(38129126-38129200)
chr5 (301-359)||(38129833-38129891)
chr5 (317-359)||(4082993-4083035)
chr5 (312-362)||(16195130-16195180)
chr5 (317-362)||(2029053-2029098)
[»] chr1 (6 HSPs)
chr1 (311-361)||(24848426-24848476)
chr1 (311-359)||(24847783-24847831)
chr1 (312-359)||(50657142-50657189)
chr1 (311-360)||(26240113-26240162)
chr1 (317-367)||(39682311-39682361)
chr1 (311-360)||(26240871-26240920)


Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-158; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-158
Query Start/End: Original strand, 8 - 363
Target Start/End: Complemental strand, 39196627 - 39196272
Alignment:
Q  8 ccaacatcaagtcatctacttctaacctaatgaatgaatggtcctctccacatcatggatgtaattgttttccatagttttccttgcacataaaccgctt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  39196627 ccaacatcaagtcatctacttctaacctaatgaatgaatggtcctctccacgtcatggatgtaattgttttccatagttttccttgcacaaaaaccgctt 39196528  T
Q  108 ccaaggttcattttcctcaaatcttgctaggttcatattctctcccaaacaacatcgatgaacctgcaagtgaacatggaaggttttgttgtgaaaacga 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39196527 ccaaggttcattttcctcaaatcttgctaggttcatattctctcccaaacaaaatcgatgaacctgcaagtgaacatggaaggttttgttgtgaaaacga 39196428  T
Q  208 aaagagcaaaggttgggtgggacaaagtataggtgttactcttttattatcaataaatctgaacccttcannnnnnnnaaaaagatccaaggatatatta 307  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||  ||||||||||||    
T  39196427 aaagagcaaaggttgagtgggacaaagtataggtgttactcttttattatcaataaatctgaacccttcatttgttttaaaaagatttaaggatatatta 39196328  T
Q  308 ttgatggtacaccggtgagggacttaatagctccctcaccttagaatccaccttta 363  Q
    ||||||||||| | ||||| ||||||||| || | |||||||||||||||||||||    
T  39196327 ttgatggtacatccgtgagagacttaataacttcttcaccttagaatccaccttta 39196272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 288 - 360
Target Start/End: Original strand, 44656294 - 44656366
Alignment:
Q  288 aaagatccaaggatatattattgatggtacaccggtgagggacttaatagctccctcaccttagaatccacct 360  Q
    ||||||| || ||||||| || || |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  44656294 aaagatctaatgatatatcatagaaggtacatcggtgagggacttaattgctccctcaccttagaatccacct 44656366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 359
Target Start/End: Original strand, 16911042 - 16911094
Alignment:
Q  307 attgatggtacaccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    ||||||||||||||||||||||||||||| |  |||||||| |||||||||||    
T  16911042 attgatggtacaccggtgagggacttaattgagccctcaccctagaatccacc 16911094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 22632968 - 22633017
Alignment:
Q  311 atggtacaccggtgagggacttaatagctccctcaccttagaatccacct 360  Q
    ||||| ||||||||||||||||||| | ||||||||| ||||||||||||    
T  22632968 atggtccaccggtgagggacttaattgatccctcaccctagaatccacct 22633017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 42094051 - 42094006
Alignment:
Q  317 caccggtgagggacttaatagctccctcaccttagaatccaccttt 362  Q
    ||||||||||||||||||| | ||||||||| ||||||||||||||    
T  42094051 caccggtgagggacttaattgatccctcaccctagaatccaccttt 42094006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 359
Target Start/End: Original strand, 4402288 - 4402335
Alignment:
Q  312 tggtacaccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    |||| |||||||||||||||||||||  |||||||| |||||||||||    
T  4402288 tggttcaccggtgagggacttaatagaaccctcaccctagaatccacc 4402335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 358
Target Start/End: Complemental strand, 22632370 - 22632323
Alignment:
Q  311 atggtacaccggtgagggacttaatagctccctcaccttagaatccac 358  Q
    ||||| ||||||||||||||||||| | ||||||||| ||||||||||    
T  22632370 atggtccaccggtgagggacttaattgatccctcaccctagaatccac 22632323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 9277792 - 9277830
Alignment:
Q  321 ggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  9277792 ggtgagggacttaattgctccctcaccctagaatccacc 9277830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 312 - 365
Target Start/End: Complemental strand, 26847144 - 26847091
Alignment:
Q  312 tggtacaccggtgagggacttaatagctccctcaccttagaatccacctttaaa 365  Q
    |||| ||||||||||||||||||| |  |||||||| |||||||||||| ||||    
T  26847144 tggttcaccggtgagggacttaattggaccctcaccctagaatccacctctaaa 26847091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 30 - 359
Target Start/End: Complemental strand, 21921927 - 21921593
Alignment:
Q  30 taacctaatgaatgaatggtcctctccacatcatggatgtaattgttttccatagttttccttgcacataaaccgcttccaaggttcattttcctcaaat 129  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21921927 taacctaatgaatgaatggtcctctccatgtcatggatgtaattgttttccatagttttccttgcacataaaccgcttccaaggttcattttcctcaaat 21921828  T
Q  130 cttgctaggttcatattctctcccaaacaacatcgatgaacctgcaagtgaacatggaaggttttgttgtgaaaacgaaaagagcaaaggttgggtggga 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21921827 cttgctaggttcatattctctcccaaacaacatcgatgaacctgcaagtgaacatggaaggttttgttgtgaaaacgaaaagagcaaaggttgagtggga 21921728  T
Q  230 caaagtataggtgttactcttttattatcaataaatctgaacccttca----nnnnnnnnaaaaagatccaaggatatattattgatggtacaccggtga 325  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||            ||||||||| || |||||||||||||||||||||||||||    
T  21921727 caaagtataggtgttactcttttattatcaataaatttgaacccttcattttttttttttaaaaagatctaaagatatattattgatggtacaccggtga 21921628  T
Q  326 gggac-ttaatagctccctcaccttagaatccacc 359  Q
    ||||| |||||||| ||||||||||||||||||||    
T  21921627 gggactttaatagccccctcaccttagaatccacc 21921593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 288 - 359
Target Start/End: Original strand, 30201965 - 30202036
Alignment:
Q  288 aaagatccaaggatatattattgatggtacaccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    ||||||| || | |||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  30201965 aaagatctaatggtatattatagatggtccaccggtgagggacttaattgctccctcaccttagaatccacc 30202036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 359
Target Start/End: Complemental strand, 1141347 - 1141300
Alignment:
Q  312 tggtacaccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    |||| |||||||||||||||| || |||||||||||||||||||||||    
T  1141347 tggtccaccggtgagggacttcattgctccctcaccttagaatccacc 1141300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 21922271 - 21922319
Alignment:
Q  309 tgatggtacaccggtgagggacttaatagctccctcaccttagaatcca 357  Q
    ||||||||||||| ||||||| ||||| ||||| |||||||||||||||    
T  21922271 tgatggtacaccgatgagggaattaattgctccttcaccttagaatcca 21922319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 29388948 - 29388999
Alignment:
Q  311 atggtacaccggtgagggacttaatagctccctcaccttagaatccaccttt 362  Q
    |||||||| ||||||||||||||||||  |||||||| || |||||||||||    
T  29388948 atggtacatcggtgagggacttaatagagccctcaccctaaaatccaccttt 29388999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 362
Target Start/End: Complemental strand, 29387471 - 29387421
Alignment:
Q  312 tggtacaccggtgagggacttaatagctccctcaccttagaatccaccttt 362  Q
    |||| ||||||||||| ||||||||||||||||| | |||||| |||||||    
T  29387471 tggtccaccggtgaggaacttaatagctccctcatcctagaattcaccttt 29387421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 322 - 359
Target Start/End: Original strand, 19275961 - 19275998
Alignment:
Q  322 gtgagggacttaatagctccctcaccttagaatccacc 359  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  19275961 gtgagggacttaatagctccttcatcttagaatccacc 19275998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 418 - 793
Target Start/End: Complemental strand, 8226083 - 8225712
Alignment:
Q  418 actttattatacataatacacaaattcttatctattgagacacctcaccaacacgtattcttt-ctctatcagaaaaattataactttgaactcgttata 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||  |||||||| |||||||||||    
T  8226083 actttattatacataatacacaaattcttatctattgagacacctcaccaacacgtattcttttctctatcaaaaaaaagataactttaaactcgttata 8225984  T
Q  517 aatatatgagttcattctcatctttaacatcacttataatgacaaatccaatttcttcaagcctttaaaaattgtgagattgttgcttcactaattccct 616  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  8225983 aatatatgagtttattctcatctttgacatcacttataatgacaaatccaatttcttcaaacctttaaaaattgtgagattgttgcttcactaattccgt 8225884  T
Q  617 atcatttgtctatgtctttatgtacatataaagcttctttattatctatcattcctaatttcaaacaannnnnnnng-ttttgtttcttaatcatctaaa 715  Q
     ||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||        | ||||||||||||||||||||||    
T  8225883 gtcatttgtct--------atgtacatataaagcttctttattatctatcattcctaatttcaaacaattttttttgtttttgtttcttaatcatctaaa 8225792  T
Q  716 gcattgccattttgtct--ccctagatccattgccatgggagaaaaactcctgaatttttgcatcatttttacagggatg 793  Q
    |||||||||||||||||  | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8225791 gcattgccattttgtctcgcgctggatccattgccatgggagaaaaactcctgaatttttgcatcatttttacagggatg 8225712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 790 - 1048
Target Start/End: Complemental strand, 8214240 - 8213978
Alignment:
Q  790 gatgtcatatttgtttgtcttctttgttttattgggtctattgttcattatgacaaagattaacaaaaattttaatacgagtgtaatttctttgattaaa 889  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  8214240 gatgtcatgtttgttcgtcttctttgttttattgggtctattgttcattatgataaagattaacaaaaattttaatatgagtgtaatttctttgattaaa 8214141  T
Q  890 tatagattgttaaaaatacttattataaaatatgtgcttgtagtacttgggtcaccttttccaacggcatctcattattgtg-tgttcctctcacttttg 988  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8214140 tatagattgttaaaactacttattataaaatatgtgcttgtagtccttgggtcaccttttccaacggcatctcattattgtgttgttcctctcacttttg 8214041  T
Q  989 tgatatctctgcatatctgataggacattggtg-atc-agcatt-gatcatcttagagaggaa 1048  Q
    |||||| || |||||| |||||||||||||||| ||| |||||| ||||||||| ||||||||    
T  8214040 tgatatttccgcatatatgataggacattggtgaatcaagcattggatcatcttggagaggaa 8213978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 790 - 1048
Target Start/End: Complemental strand, 8225691 - 8225429
Alignment:
Q  790 gatgtcatatttgtttgtcttctttgttttattgggtctattgttcattatgacaaagattaacaaaaattttaatacgagtgtaatttctttgattaaa 889  Q
    |||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  8225691 gatgtcatatttgttcatcttctttattttattgggtctattgttcattatgacaaagattaacaaaaatcttaatacaagtgtaatttctttgattaaa 8225592  T
Q  890 tatagattgttaaaaatacttattataaaatatgtgcttgtagtacttgggtcaccttttccaacggcatctcattattgtg-tgttcctctcacttttg 988  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  8225591 tataggttgttaaaactacttattataaaatatgtgcttgtagtacttgggtcaccttttccaacgacatctcattattgtgttgttcctctcacttttg 8225492  T
Q  989 tgatatctctgcatatctgataggacattggtg-atc-agcatt-gatcatcttagagaggaa 1048  Q
    |||||| ||||||||| |||||||||||||||| ||| |||||| ||||||||||||||||||    
T  8225491 tgatatttctgcatatatgataggacattggtgaatcaagcattggatcatcttagagaggaa 8225429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 360 - 612
Target Start/End: Complemental strand, 8214619 - 8214379
Alignment:
Q  360 tttaaaattagtcattttaaatattctttttgactgaaattacaaactttattattttactttattatacataatacacaaattcttatctattgagaca 459  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |             ||||||||||||||||||||||||||||||    
T  8214619 tttaaaattagtcattttaaattatctttttgactgaaattacaaactttattatat-------------ataatacacaaattcttatctattgagaca 8214533  T
Q  460 cctcaccaacacgtattcttt-ctctatcagaaaaattataactttgaactcgttataaatatatgagttcattctcatctttaacatcacttataatga 558  Q
    ||||||||| | ||||| ||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  8214532 cctcaccaatatgtattattttctctatcagaaaaaagataactttgaactcgttataaatatatgagtttattctcatctttgacatcacttataatga 8214433  T
Q  559 caaatccaatttcttcaagcctttaaaaattgtgagattgttgcttcactaatt 612  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  8214432 caaatccaatttcttcaaacctttaaaaattgtgagaatgttgcttcactaatt 8214379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 142; E-Value: 6e-74
Query Start/End: Original strand, 360 - 584
Target Start/End: Complemental strand, 8236813 - 8236589
Alignment:
Q  360 tttaaaattagtcattttaaatattctttttgactgaaattacaaactttattattttactttattatacataatacacaaattcttatctattgagaca 459  Q
    |||||||||||| |||||||||  |||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  8236813 tttaaaattagtaattttaaattatctttttgactgaaattataaactttattattttactttattatatgtaatacacaaattcttatctattgagaca 8236714  T
Q  460 cctcaccaacacgtattc-tttctctatcagaaaaattataactttgaactcgttataaatatatgagttcattctcatctttaacatcacttataatga 558  Q
    ||||| |||||||| | | |||||||||||||||||  |||||||| |||||||||||||||||| ||||||||||||||||| ||| || |||||||||    
T  8236713 cctcatcaacacgtgtccttttctctatcagaaaaa-gataactttaaactcgttataaatatataagttcattctcatctttgacaccatttataatga 8236615  T
Q  559 caaatccaatttcttcaagcctttaa 584  Q
     ||||||||||||||||| |||||||    
T  8236614 taaatccaatttcttcaaacctttaa 8236589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 694 - 793
Target Start/End: Complemental strand, 8214360 - 8214261
Alignment:
Q  694 ttttgtttcttaatcatctaaagcattgccattttgtctccctagatccattgccatgggagaaaaactcctgaatttttgcatcatttttacagggatg 793  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8214360 ttttgtttcttaatcatctaaagcattgccattttgtctccctggatccattgccatgggagaaaaactcctgaatttttgcatcatttttccagggatg 8214261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 790 - 912
Target Start/End: Complemental strand, 8236327 - 8236205
Alignment:
Q  790 gatgtcatatttgtttgtcttctttgttttattgggtctattgttcattatgacaaagattaacaaaaattttaatacgagtgtaatttctttgattaaa 889  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | ||||||||||| |||||||||||||||    
T  8236327 gatgtcatatttgttcgtcttctttgttttattgggtcgattgttcattatgacaaagattaacaagaatctcaatacgagtgtgatttctttgattaaa 8236228  T
Q  890 tatagattgttaaaaatacttat 912  Q
    ||| ||||| ||||  |||||||    
T  8236227 tatggattggtaaagttacttat 8236205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 586 - 785
Target Start/End: Complemental strand, 8236552 - 8236356
Alignment:
Q  586 aattgtgagattgttgcttcactaattccctatcatttgtctatgtctttatgtacatataaagcttctttattatctatcattcctaatttcaaacaan 685  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||||||||||||||| |||| |||||||||         
T  8236552 aattgtgagattgttgcttcactaattccttgtcatttgtctatgtctttaggtagatataaagcttctttattatctattattcataatttcaattttt 8236453  T
Q  686 nnnnnnngt--tttgtt-tcttaatcatctaaagcattgccattttgtctccctagatccattgccatgggagaaaaactcctgaatttttgcatcattt 782  Q
            |  ||| || ||||||||||| |||||||||||||||||||||||| ||     | |||||||||||||||||||||||||| |||||||||    
T  8236452 ttttgtttttatttattctcttaatcatc-aaagcattgccattttgtctccctgga-----taccatgggagaaaaactcctgaattttagcatcattt 8236359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 361 - 430
Target Start/End: Complemental strand, 8233519 - 8233450
Alignment:
Q  361 ttaaaattagtcattttaaatattctttttgactgaaattacaaactttattattttactttattataca 430  Q
    ||||||||| |||||||||||  |||||||||||||||||  ||||||  ||||||||||||||||||||    
T  8233519 ttaaaattactcattttaaattctctttttgactgaaatttaaaacttatttattttactttattataca 8233450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 360 - 414
Target Start/End: Complemental strand, 8226128 - 8226074
Alignment:
Q  360 tttaaaattagtcattttaaatattctttttgactgaaattacaaactttattat 414  Q
    ||||||||||||||||| ||||  |||||| ||||||||||||||||||||||||    
T  8226128 tttaaaattagtcatttaaaattatcttttagactgaaattacaaactttattat 8226074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 312 - 362
Target Start/End: Original strand, 34423572 - 34423622
Alignment:
Q  312 tggtacaccggtgagggacttaatagctccctcaccttagaatccaccttt 362  Q
    ||||||| |||||||||||||||| ||| ||||||| ||||||||||||||    
T  34423572 tggtacatcggtgagggacttaattgcttcctcaccctagaatccaccttt 34423622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 34423421 - 34423373
Alignment:
Q  312 tggtacaccggtgagggacttaatagctccctcaccttagaatccacct 360  Q
    ||||||| |||||||||||||||| ||||||||||  ||||||||||||    
T  34423421 tggtacatcggtgagggacttaattgctccctcacactagaatccacct 34423373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 2e-27; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 30 - 161
Target Start/End: Original strand, 38644843 - 38644973
Alignment:
Q  30 taacctaatgaatgaatggtcctctccacatcatggatgtaattgttttccatagttttccttgcacataaaccgcttccaaggttcattttcctcaaat 129  Q
    ||||||||||||||||||||| | ||||   |||| |||||||||||||||||||||||| ||||||| ||   ||||||||| ||||| |||| |  ||    
T  38644843 taacctaatgaatgaatggtcttgtccatgccatgaatgtaattgttttccatagttttctttgcacaaaattggcttccaagattcatattcc-cccat 38644941  T
Q  130 cttgctaggttcatattctctcccaaacaaca 161  Q
    ||||||||||||||||||||||||||||||||    
T  38644942 cttgctaggttcatattctctcccaaacaaca 38644973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 288 - 360
Target Start/End: Complemental strand, 44120429 - 44120357
Alignment:
Q  288 aaagatccaaggatatattattgatggtacaccggtgagggacttaatagctccctcaccttagaatccacct 360  Q
    ||||||| || |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44120429 aaagatctaatgatatattatagatggtacaccggtgagggacttaattgctccctcaccttagaatccacct 44120357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 287 - 355
Target Start/End: Original strand, 38648373 - 38648441
Alignment:
Q  287 aaaagatccaaggatatattattgatggtacaccggtgagggacttaatagctccctcaccttagaatc 355  Q
    ||||||||||| | |||||||||||||||||| |||||||||||||||| ||||||||| |||||||||    
T  38648373 aaaagatccaatgctatattattgatggtacatcggtgagggacttaattgctccctcatcttagaatc 38648441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 359
Target Start/End: Original strand, 44121059 - 44121131
Alignment:
Q  288 aaagatccaaggata-tattattgatggtacaccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    |||||||||| |||| |||||| |||||||||||||||||||||||||| ||||||||  |||| ||||||||    
T  44121059 aaagatccaatgatagtattatagatggtacaccggtgagggacttaattgctccctcgtcttataatccacc 44121131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 288 - 359
Target Start/End: Original strand, 8755094 - 8755165
Alignment:
Q  288 aaagatccaaggatatattattgatggtacaccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    ||||||| || | |||||||| |||||||||||||||||||| |||||  |||||||||||||||| |||||    
T  8755094 aaagatctaatggtatattatagatggtacaccggtgagggatttaatttctccctcaccttagaacccacc 8755165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 288 - 357
Target Start/End: Complemental strand, 8754244 - 8754175
Alignment:
Q  288 aaagatccaaggatatattattgatggtacaccggtgagggacttaatagctccctcaccttagaatcca 357  Q
    ||||||| || | ||| |||| ||||||||||||||||| |||||||| ||| |||||||||||||||||    
T  8754244 aaagatctaatggtatgttatcgatggtacaccggtgagagacttaattgcttcctcaccttagaatcca 8754175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 311 - 360
Target Start/End: Complemental strand, 28007205 - 28007156
Alignment:
Q  311 atggtacaccggtgagggacttaatagctccctcaccttagaatccacct 360  Q
    ||||| ||||||||||||||||||| ||||||||||| ||||||||||||    
T  28007205 atggtccaccggtgagggacttaattgctccctcaccctagaatccacct 28007156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 301 - 358
Target Start/End: Complemental strand, 38643524 - 38643467
Alignment:
Q  301 tatattattgatggtacaccggtgagggacttaatagctccctcaccttagaatccac 358  Q
    |||||||||||||| ||| |||||| || |||||| ||||||||||||||||||||||    
T  38643524 tatattattgatggcacaacggtgaagggcttaattgctccctcaccttagaatccac 38643467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 312 - 360
Target Start/End: Original strand, 35892304 - 35892352
Alignment:
Q  312 tggtacaccggtgagggacttaatagctccctcaccttagaatccacct 360  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||||||||    
T  35892304 tggtacaccggtgagggatttaattgctccctcaccctagaatccacct 35892352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 359
Target Start/End: Original strand, 28007814 - 28007861
Alignment:
Q  312 tggtacaccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    |||| ||||||||||||||||||||||||| ||||| |||||||||||    
T  28007814 tggtccaccggtgagggacttaatagctccatcaccctagaatccacc 28007861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 34807976 - 34807935
Alignment:
Q  311 atggtacaccggtgagggacttaatagctccctcaccttaga 352  Q
    ||||| ||||||||||||||||||| ||||||||||||||||    
T  34807976 atggtccaccggtgagggacttaattgctccctcaccttaga 34807935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 1511895 - 1511851
Alignment:
Q  311 atggtacaccggtgagggacttaatagctccctcaccttagaatc 355  Q
    |||||||||||||||||||||||||||  || |||||||||||||    
T  1511895 atggtacaccggtgagggacttaatagaaccatcaccttagaatc 1511851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 359
Target Start/End: Complemental strand, 3315002 - 3314955
Alignment:
Q  312 tggtacaccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    |||||||||||||||||||||||| |  |||||||| |||||||||||    
T  3315002 tggtacaccggtgagggacttaattgaaccctcaccgtagaatccacc 3314955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 360
Target Start/End: Complemental strand, 18568421 - 18568366
Alignment:
Q  305 ttattgatggtacaccggtgagggacttaatagctccctcaccttagaatccacct 360  Q
    ||||||||||  |||||||||||| ||| ||||  |||||||||||||||||||||    
T  18568421 ttattgatggatcaccggtgaggggcttgatagagccctcaccttagaatccacct 18568366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 360
Target Start/End: Original strand, 18633556 - 18633611
Alignment:
Q  305 ttattgatggtacaccggtgagggacttaatagctccctcaccttagaatccacct 360  Q
    ||||||||||  |||||||||||| ||| ||||  |||||||||||||||||||||    
T  18633556 ttattgatggatcaccggtgaggggcttgatagagccctcaccttagaatccacct 18633611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 360
Target Start/End: Original strand, 18646268 - 18646323
Alignment:
Q  305 ttattgatggtacaccggtgagggacttaatagctccctcaccttagaatccacct 360  Q
    ||||||||||  |||||||||||| ||| ||||  |||||||||||||||||||||    
T  18646268 ttattgatggatcaccggtgaggggcttgatagagccctcaccttagaatccacct 18646323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 360
Target Start/End: Original strand, 18648853 - 18648908
Alignment:
Q  305 ttattgatggtacaccggtgagggacttaatagctccctcaccttagaatccacct 360  Q
    ||||||||||  |||||||||||| ||| ||||  |||||||||||||||||||||    
T  18648853 ttattgatggatcaccggtgaggggcttgatagagccctcaccttagaatccacct 18648908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 1512562 - 1512612
Alignment:
Q  313 ggtacaccggtgagggacttaatagctccctcaccttagaatccaccttta 363  Q
    ||||||||||||||| |||||||||  | |||||| |||||||||||||||    
T  1512562 ggtacaccggtgaggaacttaatagagctctcaccctagaatccaccttta 1512612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 359
Target Start/End: Complemental strand, 36791637 - 36791587
Alignment:
Q  309 tgatggtacaccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    ||||||| || ||||||||||||| ||||  ||||||||||||||||||||    
T  36791637 tgatggttcatcggtgagggacttgatagggccctcaccttagaatccacc 36791587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 318 - 359
Target Start/End: Original strand, 3315470 - 3315511
Alignment:
Q  318 accggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    |||||||||||||||||| |  ||||||||||||||||||||    
T  3315470 accggtgagggacttaattgagccctcaccttagaatccacc 3315511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 18591184 - 18591131
Alignment:
Q  305 ttattgatggtacaccggtgagggacttaatagctccctcaccttagaatccac 358  Q
    ||||||||||  |||||||||||| ||| ||||  |||||||||||||||||||    
T  18591184 ttattgatggatcaccggtgaggggcttgatagagccctcaccttagaatccac 18591131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 305 - 358
Target Start/End: Original strand, 18620501 - 18620554
Alignment:
Q  305 ttattgatggtacaccggtgagggacttaatagctccctcaccttagaatccac 358  Q
    ||||||||||  |||||||||||| ||| ||||  |||||||||||||||||||    
T  18620501 ttattgatggatcaccggtgaggggcttgatagagccctcaccttagaatccac 18620554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 2e-24; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 142 - 275
Target Start/End: Complemental strand, 34047467 - 34047332
Alignment:
Q  142 atattctctcccaaacaacatcgatgaacctgcaagtgaac----atggaaggttttgttgtgaaaacgaaaagagcaaa--ggttgggtgggacaaagt 235  Q
    |||||||||||||||||||||| || |||||||||||||||    ||||||||||||||||||||||| ||||||||| |  ||||| |||    |||||    
T  34047467 atattctctcccaaacaacatccataaacctgcaagtgaacgaacatggaaggttttgttgtgaaaacaaaaagagcatatgggttgagtg----aaagt 34047372  T
Q  236 ataggtgttactcttttattatcaataaatctgaaccctt 275  Q
    ||||||| ||||||||| ||||||| |||| |||||||||    
T  34047371 ataggtgctactcttttgttatcaacaaatatgaaccctt 34047332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 301 - 360
Target Start/End: Original strand, 6258136 - 6258195
Alignment:
Q  301 tatattattgatggtacaccggtgagggacttaatagctccctcaccttagaatccacct 360  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  6258136 tatattatagatggtacatcggtgagggacttaattgctccctcaccttagaatccacct 6258195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 360
Target Start/End: Complemental strand, 6256834 - 6256762
Alignment:
Q  288 aaagatccaaggatatattattgatggtacaccggtgagggacttaatagctccctcaccttagaatccacct 360  Q
    ||||||| || ||||||||||  |||||||||||||||| ||| |||| | | ||||||||||||||||||||    
T  6256834 aaagatcgaatgatatattataaatggtacaccggtgagagacctaattgtttcctcaccttagaatccacct 6256762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 359
Target Start/End: Original strand, 36249124 - 36249195
Alignment:
Q  288 aaagatccaaggatatattattgatggtacaccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    ||||||| || | |||||||| |||||| ||||| ||||||||||||| |||| |||| |||||||||||||    
T  36249124 aaagatctaatggtatattatagatggttcaccgatgagggacttaattgctctctcatcttagaatccacc 36249195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 34047550 - 34047468
Alignment:
Q  36 aatgaatgaatggtcctctccacatcatggatgtaattgttttccatagttttccttgcacataaaccgcttccaaggttcat 118  Q
    |||||||||| |||| | ||||  ||||| |||||||||||||| |||| |||||||||||| ||| ||||| |||| |||||    
T  34047550 aatgaatgaacggtcttgtccatgtcatgaatgtaattgttttctatagctttccttgcacaaaaatcgctttcaagattcat 34047468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 301 - 359
Target Start/End: Complemental strand, 36248457 - 36248399
Alignment:
Q  301 tatattattgatggtacaccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    ||||||||  ||||| ||||||||||||| ||||| |||||||||||||||||| ||||    
T  36248457 tatattatacatggtccaccggtgagggatttaattgctccctcaccttagaattcacc 36248399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 361
Target Start/End: Original strand, 14527577 - 14527626
Alignment:
Q  312 tggtacaccggtgagggacttaatagctccctcaccttagaatccacctt 361  Q
    |||| ||||||||||||||||||| | ||||||||| |||||||||||||    
T  14527577 tggttcaccggtgagggacttaattgatccctcaccctagaatccacctt 14527626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 38519188 - 38519233
Alignment:
Q  312 tggtacaccggtgagggacttaatagctccctcaccttagaatcca 357  Q
    |||||||||||||||||||||||| ||||| ||||| |||||||||    
T  38519188 tggtacaccggtgagggacttaattgctccttcaccctagaatcca 38519233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 311 - 359
Target Start/End: Complemental strand, 24666177 - 24666129
Alignment:
Q  311 atggtacaccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    ||||| ||||||||||||||||||| | ||||||||| |||||||||||    
T  24666177 atggttcaccggtgagggacttaattgatccctcaccctagaatccacc 24666129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 311 - 359
Target Start/End: Original strand, 25725808 - 25725856
Alignment:
Q  311 atggtacaccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    ||||| ||||||||||||||||||| ||||||||||| |||| ||||||    
T  25725808 atggtccaccggtgagggacttaattgctccctcaccctagactccacc 25725856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 36253535 - 36253491
Alignment:
Q  311 atggtacaccggtgagggacttaatagctccctcaccttagaatc 355  Q
    |||||||| ||||||||||||||||||  ||||||||||||||||    
T  36253535 atggtacatcggtgagggacttaatagaaccctcaccttagaatc 36253491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 363
Target Start/End: Original strand, 13925650 - 13925701
Alignment:
Q  312 tggtacaccggtgagggacttaatagctccctcaccttagaatccaccttta 363  Q
    |||| ||||||||||||||||| | | |||||||| ||||||||||||||||    
T  13925650 tggtccaccggtgagggacttagttgatccctcactttagaatccaccttta 13925701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 359
Target Start/End: Original strand, 21527027 - 21527073
Alignment:
Q  313 ggtacaccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    |||||| ||||||||||||||||||  |||||||| |||||||||||    
T  21527027 ggtacaacggtgagggacttaatagagccctcaccctagaatccacc 21527073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 26393400 - 26393442
Alignment:
Q  313 ggtacaccggtgagggacttaatagctccctcaccttagaatc 355  Q
    |||||||||||||||||||||||||  |||||||| |||||||    
T  26393400 ggtacaccggtgagggacttaatagagccctcaccctagaatc 26393442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 7e-21; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 288 - 360
Target Start/End: Original strand, 52924410 - 52924482
Alignment:
Q  288 aaagatccaaggatatattattgatggtacaccggtgagggacttaatagctccctcaccttagaatccacct 360  Q
    ||||||| || |||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  52924410 aaagatctaatgatatattatagatggtgcaccggtgagggacttaattgctccctcaccttagaatccacct 52924482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 34869061 - 34869114
Alignment:
Q  301 tatattattgatggtacaccggtgagggactt-aatagctccctcaccttagaa 353  Q
    |||||||||||||||||||||||||||||||| ||| ||||| |||||||||||    
T  34869061 tatattattgatggtacaccggtgagggacttaaattgctccttcaccttagaa 34869114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 311 - 359
Target Start/End: Original strand, 4706956 - 4707004
Alignment:
Q  311 atggtacaccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    |||||||||||||||||||||||||||  |||||||| |||||||||||    
T  4706956 atggtacaccggtgagggacttaatagaaccctcaccctagaatccacc 4707004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 33762688 - 33762732
Alignment:
Q  311 atggtacaccggtgagggacttaatagctccctcaccttagaatc 355  Q
    |||||||||||||||||||||||||||  ||||||||||||||||    
T  33762688 atggtacaccggtgagggacttaatagaaccctcaccttagaatc 33762732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 360
Target Start/End: Complemental strand, 52923779 - 52923720
Alignment:
Q  300 atatattattgatggtacaccggtgagggacttaatagctccctcaccttagaatccacct 360  Q
    ||||||||| ||||||||||||||| || ||||||| ||||||| ||||||||||||||||    
T  52923779 atatattatagatggtacaccggtg-ggaacttaattgctcccttaccttagaatccacct 52923720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 359
Target Start/End: Complemental strand, 3584052 - 3584005
Alignment:
Q  312 tggtacaccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    |||||||||||||||||| ||||| ||||||||||| |||||||||||    
T  3584052 tggtacaccggtgagggatttaattgctccctcaccctagaatccacc 3584005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 359
Target Start/End: Original strand, 24515014 - 24515061
Alignment:
Q  312 tggtacaccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    |||| |||||||||||||||||||| |||||||||| |||||||||||    
T  24515014 tggtccaccggtgagggacttaataactccctcaccctagaatccacc 24515061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 311 - 359
Target Start/End: Complemental strand, 20807985 - 20807937
Alignment:
Q  311 atggtacaccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    ||||||||||||||||||||||||| |  |||||||| |||||||||||    
T  20807985 atggtacaccggtgagggacttaattgaaccctcaccctagaatccacc 20807937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 311 - 359
Target Start/End: Complemental strand, 24512042 - 24511994
Alignment:
Q  311 atggtacaccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    ||||| ||||||||||||||||||| ||||||||||| || ||||||||    
T  24512042 atggtccaccggtgagggacttaattgctccctcaccctaaaatccacc 24511994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 288 - 335
Target Start/End: Complemental strand, 9716113 - 9716066
Alignment:
Q  288 aaagatccaaggatatattattgatggtacaccggtgagggacttaat 335  Q
    ||||||| || |||||||||| ||||||||||||||||||| ||||||    
T  9716113 aaagatctaatgatatattatagatggtacaccggtgaggggcttaat 9716066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 33762016 - 33761970
Alignment:
Q  313 ggtacaccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    ||||||||||||||| |||||||||  |||||||| |||||||||||    
T  33762016 ggtacaccggtgaggaacttaatagagccctcaccctagaatccacc 33761970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 47571238 - 47571196
Alignment:
Q  317 caccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    ||||||||||||||||||| | ||||||||| |||||||||||    
T  47571238 caccggtgagggacttaattgatccctcaccctagaatccacc 47571196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 49349718 - 49349676
Alignment:
Q  317 caccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    ||||||||||||||||||| | ||||||||| |||||||||||    
T  49349718 caccggtgagggacttaattgatccctcaccctagaatccacc 49349676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 2e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 288 - 359
Target Start/End: Complemental strand, 38129200 - 38129126
Alignment:
Q  288 aaagatccaaggatatattat---tgatggtacaccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    ||||||| || ||||||||||   ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38129200 aaagatctaatgatatattatagatgatggtacaccggtgagggacttaattgctccctcaccttagaatccacc 38129126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 359
Target Start/End: Original strand, 38129833 - 38129891
Alignment:
Q  301 tatattattgatggtacaccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    ||||| || |||||||||||||||||||||||||| | |||||||||||| ||||||||    
T  38129833 tatataatagatggtacaccggtgagggacttaattgttccctcaccttaaaatccacc 38129891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 4083035 - 4082993
Alignment:
Q  317 caccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    ||||| ||||||||||||||||||||||||| |||||||||||    
T  4083035 caccgatgagggacttaatagctccctcaccctagaatccacc 4082993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 362
Target Start/End: Original strand, 16195130 - 16195180
Alignment:
Q  312 tggtacaccggtgagggacttaatagctccctcaccttagaatccaccttt 362  Q
    ||||||||| |||| ||||||||| | ||||||||| ||||||||||||||    
T  16195130 tggtacaccagtgatggacttaattgatccctcaccctagaatccaccttt 16195180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 2029053 - 2029098
Alignment:
Q  317 caccggtgagggacttaatagctccctcaccttagaatccaccttt 362  Q
    ||||||||||||||||||| |  |||||||| ||||||||||||||    
T  2029053 caccggtgagggacttaattgagccctcaccctagaatccaccttt 2029098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 361
Target Start/End: Original strand, 24848426 - 24848476
Alignment:
Q  311 atggtacaccggtgagggacttaatagctccctcaccttagaatccacctt 361  Q
    |||||||||||||||||||||||||||  |||||||| |||||||||||||    
T  24848426 atggtacaccggtgagggacttaatagaaccctcaccctagaatccacctt 24848476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 311 - 359
Target Start/End: Complemental strand, 24847831 - 24847783
Alignment:
Q  311 atggtacaccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    |||||||||||||||||||||||||||  |||||||| |||||||||||    
T  24847831 atggtacaccggtgagggacttaatagaaccctcaccctagaatccacc 24847783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 359
Target Start/End: Original strand, 50657142 - 50657189
Alignment:
Q  312 tggtacaccggtgagggacttaatagctccctcaccttagaatccacc 359  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  50657142 tggtccaccggtgagggacttaattgctccctcgccttagaatccacc 50657189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 360
Target Start/End: Complemental strand, 26240162 - 26240113
Alignment:
Q  311 atggtacaccggtgagggacttaatagctccctcaccttagaatccacct 360  Q
    ||||| ||||||||||||||||||| | ||||||||| ||||||||||||    
T  26240162 atggttcaccggtgagggacttaattgatccctcaccctagaatccacct 26240113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 367
Target Start/End: Complemental strand, 39682361 - 39682311
Alignment:
Q  317 caccggtgagggacttaatagctccctcaccttagaatccacctttaaaat 367  Q
    ||||||||| |||||| ||||  |||||||| |||||||||||||||||||    
T  39682361 caccggtgaaggacttgatagagccctcaccctagaatccacctttaaaat 39682311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 26240871 - 26240920
Alignment:
Q  311 atggtacaccggtgagggacttaatagctccctcaccttagaatccacct 360  Q
    ||||| ||||||||||||||||||| |  |||||||| ||||||||||||    
T  26240871 atggtccaccggtgagggacttaattgaaccctcaccctagaatccacct 26240920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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