View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4406-Insertion-2 (Length: 938)
Name: NF4406-Insertion-2
Description: NF4406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4406-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-130; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-130
Query Start/End: Original strand, 516 - 888
Target Start/End: Complemental strand, 7167147 - 7166792
Alignment:
| Q |
516 |
gtttgagtggaacaaatgtagtagatcgactagtttttattcttgcgttaatatgttttttgtctctacaatatatatggagcgaattcggtattagtcc |
615 |
Q |
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| T |
7167147 |
gtttgagtggaacaaatgtagtagatcgactagtttttattcttgggttaatatatttttggtctttacaatatatatggaacgaattcggtattagtcc |
7167048 |
T |
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| Q |
616 |
ctctnnnnnnnntagattctacccttaacaattcatattttttatttaagttcttcatttaagtttggactaaaatgttggttacacatattccaaatga |
715 |
Q |
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| T |
7167047 |
ctctaaaaaaaatagattctacccctaacaattcatattttttatttaagtt-------------tggactaaaatgtgggttacacatattc-aaatga |
7166962 |
T |
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| Q |
716 |
ctaaagttaaatgaaggattaaaattgaagaatctaaaatgttaaggatattgtagcttcgacccttatgtattccaaataaaaatatgttccaagataa |
815 |
Q |
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| T |
7166961 |
ctaaagttaaatgaaggattaaaattgaagaatctaaaatgttaaggatattgtagcttcgacccttatgtattccaaataaaaatatgtt-aaagataa |
7166863 |
T |
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| Q |
816 |
attctaaacttattacttgacaaataaaaatatgttaatgataaaatcctaaaccttattacatgacaaaaac |
888 |
Q |
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| T |
7166862 |
attctaaacttattacatgacaaataaaaatatgttaatgataaaat-ctaaa-cttattacatgacaaaaac |
7166792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 144 - 281
Target Start/End: Complemental strand, 7167657 - 7167518
Alignment:
| Q |
144 |
ttttcctgctttaattttgtttttgccaacacaatagtgcatcatcaccaaccactccctctaacaacaatggtacatttttctattttattattttgtt |
243 |
Q |
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| T |
7167657 |
ttttcctgctttaattttgtttttgccaacacaatagtgcatcatcaccaaccactccctctaacaacaatggtacatttttctgttttattattttgtt |
7167558 |
T |
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| Q |
244 |
ttctgccaacaca--atagtacatcatctccaactactcc |
281 |
Q |
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| T |
7167557 |
ttctgccaacacaatatagtacatcatctccaactactcc |
7167518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 289 - 349
Target Start/End: Complemental strand, 7167450 - 7167390
Alignment:
| Q |
289 |
tatcataactttgttggtcgattataaatatgaaggaaagatattacacccattgcaaatc |
349 |
Q |
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| T |
7167450 |
tatcataactttgttggtcgattataaatatgaaggaaagatattacacccattgcaaatc |
7167390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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