View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4406-Insertion-5 (Length: 607)
Name: NF4406-Insertion-5
Description: NF4406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4406-Insertion-5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 8 - 607
Target Start/End: Complemental strand, 32737505 - 32736888
Alignment:
| Q |
8 |
aagaagaggccccttctgctgaggtacccttgaacgccacgtcatagatatgtaaattgtataaacccacaaaaaagcaacttt-------gcaa----- |
95 |
Q |
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| T |
32737505 |
aagaagaggccccttcagctgaggtacccttgaacgccacgtcatagatatgtaaattgtataaacccacaaaaaagcaacttgcaatgtagcaaagttc |
32737406 |
T |
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| Q |
96 |
-----tgtacggatttctgcattgcacttttaaaattttggaccctaattccaaattataataatccacatattttctagcactagacactagt-agtac |
189 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
32737405 |
aataatgtacggatttctgcattgcacttttataattttggaccctaattccaaattataataatccacatattttctagcacttgacactagttagtac |
32737306 |
T |
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| Q |
190 |
tattatttgtagtctcgtgtgtatgtaatgtagtaccataaactccttcatagggattatcaatgtgattccataatttaatgttttgtcttgtgaactt |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32737305 |
tattatttgtagtctcgtgtgtatgtaatgtagtaccataaactacttcatagggattatcaatgtgattccataatttaatgttttgtcttgtgaactt |
32737206 |
T |
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| Q |
290 |
tacttgaaaaaattgagattaaaatttattcctttgatcggcataaaataaatgttctctattatattacaaattgtgaataaaatcagatttgaagcag |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32737205 |
tacttgaaaaaattgagattaaaatttattcctttgatcggcataaaataaatgttctctattatattacaaattgtgaatgaaatcagatttgaagcat |
32737106 |
T |
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| Q |
390 |
agattcgcctaattatagacaagtgggaaagaggattgcttagtggtagagatgaaagctcaacaccattggaagtatggaatgtttcctagttgggcat |
489 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32737105 |
agattcgcctaattatagacaagtgggaaagagggttgcttagtggtagagatgaaagctcaaaaccattggaagtatggaatgtttcctagttgggcat |
32737006 |
T |
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| Q |
490 |
tgcagtgttaccacatgaaaaaagggttaccacatgacaagaggaatgggggttgagttgaatttatgtacactcaattgaccgaacatacaatgtttta |
589 |
Q |
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| T |
32737005 |
tgcagtgttaccacatgaaaaaagggttaccacatgacaagaggaatgggggttgagttgaatttatgtacactcaattgaccgaacatacaatgtttta |
32736906 |
T |
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| Q |
590 |
aaataaattatacagtag |
607 |
Q |
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| T |
32736905 |
aaataaattatatagtag |
32736888 |
T |
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