View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4406-Insertion-6 (Length: 599)

Name: NF4406-Insertion-6
Description: NF4406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4406-Insertion-6
NF4406-Insertion-6
[»] chr6 (18 HSPs)
chr6 (335-599)||(33215185-33215452)
chr6 (8-236)||(33216217-33216445)
chr6 (502-591)||(1127224-1127313)
chr6 (502-599)||(27822140-27822238)
chr6 (506-599)||(14238410-14238503)
chr6 (502-584)||(8049003-8049084)
chr6 (502-599)||(18727865-18727964)
chr6 (502-599)||(12882092-12882190)
chr6 (538-598)||(3536040-3536099)
chr6 (539-599)||(18727115-18727174)
chr6 (502-598)||(11658901-11658997)
chr6 (538-591)||(29340837-29340889)
chr6 (538-591)||(30052209-30052261)
chr6 (502-587)||(33615538-33615623)
chr6 (538-587)||(33693861-33693910)
chr6 (538-598)||(3542251-3542310)
chr6 (538-598)||(30049922-30049981)
chr6 (519-588)||(22873801-22873870)
[»] chr7 (29 HSPs)
chr7 (502-590)||(24840113-24840201)
chr7 (501-599)||(1369774-1369872)
chr7 (502-591)||(6451780-6451869)
chr7 (502-588)||(27142636-27142722)
chr7 (502-599)||(11000848-11000945)
chr7 (507-591)||(4888716-4888799)
chr7 (538-598)||(27309638-27309698)
chr7 (538-599)||(1883495-1883556)
chr7 (538-599)||(5934610-5934671)
chr7 (538-590)||(1753629-1753681)
chr7 (538-598)||(1874544-1874604)
chr7 (502-590)||(11228951-11229039)
chr7 (393-460)||(18790362-18790429)
chr7 (502-588)||(8916410-8916496)
chr7 (502-599)||(11228690-11228788)
chr7 (511-599)||(30217794-30217880)
chr7 (538-598)||(859180-859239)
chr7 (538-598)||(1217184-1217243)
chr7 (538-598)||(13882710-13882769)
chr7 (538-598)||(13886183-13886242)
chr7 (506-569)||(3778760-3778823)
chr7 (502-599)||(1365641-1365738)
chr7 (353-406)||(1785621-1785675)
chr7 (501-599)||(4133296-4133394)
chr7 (557-599)||(13466756-13466798)
chr7 (519-588)||(7803064-7803133)
chr7 (502-590)||(1786653-1786741)
chr7 (502-599)||(35814841-35814937)
chr7 (538-598)||(1220464-1220523)
[»] chr2 (23 HSPs)
chr2 (502-599)||(23457616-23457713)
chr2 (502-588)||(23456545-23456631)
chr2 (504-597)||(32161993-32162086)
chr2 (502-599)||(33051588-33051685)
chr2 (502-591)||(5171615-5171704)
chr2 (500-569)||(8294546-8294615)
chr2 (538-599)||(36647299-36647359)
chr2 (502-598)||(21772345-21772440)
chr2 (538-598)||(27952342-27952401)
chr2 (538-598)||(27956178-27956237)
chr2 (538-598)||(31634110-31634169)
chr2 (506-576)||(12123941-12124011)
chr2 (502-582)||(4184898-4184979)
chr2 (538-599)||(15129396-15129456)
chr2 (513-598)||(18945941-18946026)
chr2 (538-598)||(2155973-2156032)
chr2 (538-598)||(22011442-22011501)
chr2 (550-598)||(29715168-29715216)
chr2 (538-598)||(31636343-31636402)
chr2 (538-598)||(33655634-33655693)
chr2 (538-588)||(32163804-32163854)
chr2 (502-565)||(36615178-36615243)
chr2 (538-599)||(28737912-28737972)
[»] chr4 (21 HSPs)
chr4 (502-587)||(10494873-10494958)
chr4 (502-599)||(13991401-13991498)
chr4 (502-597)||(15848375-15848469)
chr4 (502-588)||(7634050-7634136)
chr4 (501-591)||(18689551-18689641)
chr4 (542-599)||(54700619-54700676)
chr4 (502-599)||(7724099-7724193)
chr4 (501-599)||(17254905-17255003)
chr4 (502-599)||(22486798-22486893)
chr4 (538-595)||(38888016-38888073)
chr4 (502-598)||(53477235-53477333)
chr4 (538-599)||(50515917-50515978)
chr4 (502-582)||(3675081-3675161)
chr4 (538-598)||(6659354-6659413)
chr4 (502-570)||(13990728-13990796)
chr4 (501-589)||(18657074-18657162)
chr4 (391-453)||(26974834-26974896)
chr4 (538-599)||(7723686-7723745)
chr4 (504-581)||(9260545-9260622)
chr4 (506-599)||(40206123-40206215)
chr4 (391-460)||(53477384-53477453)
[»] chr1 (18 HSPs)
chr1 (515-598)||(28660769-28660852)
chr1 (502-599)||(10927164-10927259)
chr1 (502-599)||(12944086-12944183)
chr1 (502-574)||(31915519-31915592)
chr1 (502-591)||(50713683-50713772)
chr1 (502-599)||(10928259-10928356)
chr1 (504-599)||(43681433-43681529)
chr1 (501-584)||(33152756-33152841)
chr1 (514-599)||(31913359-31913443)
chr1 (502-590)||(8221458-8221546)
chr1 (538-598)||(8931226-8931285)
chr1 (502-594)||(9194970-9195061)
chr1 (538-599)||(28661090-28661151)
chr1 (502-599)||(10925710-10925804)
chr1 (538-589)||(13444021-13444071)
chr1 (355-404)||(8968031-8968081)
chr1 (502-599)||(28659587-28659686)
chr1 (538-598)||(50857468-50857527)
[»] chr8 (22 HSPs)
chr8 (502-599)||(24731197-24731294)
chr8 (502-598)||(25479427-25479524)
chr8 (502-588)||(20693769-20693855)
chr8 (502-588)||(14130135-14130221)
chr8 (502-598)||(16598218-16598315)
chr8 (502-581)||(2689117-2689195)
chr8 (511-598)||(18468628-18468714)
chr8 (500-599)||(2189744-2189844)
chr8 (502-591)||(2687712-2687801)
chr8 (502-595)||(24577554-24577647)
chr8 (502-591)||(24578807-24578896)
chr8 (538-599)||(42890398-42890458)
chr8 (538-599)||(42891687-42891747)
chr8 (538-598)||(23570590-23570649)
chr8 (538-591)||(22926679-22926731)
chr8 (538-599)||(24731038-24731099)
chr8 (502-599)||(26374870-26374966)
chr8 (538-598)||(22512070-22512129)
chr8 (538-598)||(22519370-22519429)
chr8 (538-598)||(22921874-22921933)
chr8 (355-409)||(2688971-2689026)
chr8 (538-598)||(6845342-6845401)
[»] chr3 (8 HSPs)
chr3 (506-599)||(2472711-2472803)
chr3 (538-598)||(43303984-43304043)
chr3 (538-591)||(5128915-5128967)
chr3 (502-574)||(2107901-2107972)
chr3 (538-598)||(43306696-43306755)
chr3 (539-590)||(45168351-45168401)
chr3 (538-599)||(33175841-33175902)
chr3 (538-598)||(3063761-3063820)
[»] scaffold0110 (1 HSPs)
scaffold0110 (511-597)||(46758-46844)
[»] chr5 (8 HSPs)
chr5 (502-569)||(18252386-18252453)
chr5 (541-599)||(492576-492634)
chr5 (517-598)||(8456402-8456483)
chr5 (502-598)||(26140313-26140409)
chr5 (506-598)||(19497327-19497419)
chr5 (538-598)||(21848989-21849048)
chr5 (538-591)||(40778817-40778869)
chr5 (538-598)||(9868428-9868488)
[»] scaffold0251 (1 HSPs)
scaffold0251 (502-599)||(9672-9770)
[»] scaffold0054 (1 HSPs)
scaffold0054 (513-591)||(37693-37769)
[»] scaffold0240 (1 HSPs)
scaffold0240 (506-599)||(1632-1724)
[»] scaffold0024 (1 HSPs)
scaffold0024 (550-599)||(145752-145801)
[»] scaffold0531 (1 HSPs)
scaffold0531 (538-584)||(11626-11671)
[»] scaffold0330 (1 HSPs)
scaffold0330 (538-599)||(17646-17706)
[»] scaffold0236 (1 HSPs)
scaffold0236 (538-594)||(16404-16459)


Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 335 - 599
Target Start/End: Complemental strand, 33215452 - 33215185
Alignment:
Q  335 ggttcatgttggacaccttgatgtaggatggtttctttagtattattattgagcctaattttaataatttatgttgtattttctgttctagtttttcggt 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||| |    
T  33215452 ggttcatgttggacaccttgatgtaggatggtttctttagtattattattgagcctaattttaataatttatgttttattttctgttttaggttttcgat 33215353  T
Q  435 tcattagggtttccttagtgtttaaagtttaaacacttcagttgtagccagagaga--gttttatt-attagagttttttcaatttctggtggattacgg 531  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||||||||||    
T  33215352 tcattagggtttccttagtgtttaaagtttacacacttcagttgtagctagagagactgttttattcattagagttttttcaatttctggtggattacgg 33215253  T
Q  532 aacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33215252 aacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctagatttagcgtttgctag 33215185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 33216445 - 33216217
Alignment:
Q  8 gaatagtggaaaaacaaagaagtttgaagttttgttttgatgaatagagaaggttctgtctgaggtttgtgttcagtttgttttgtttctatataaactg 107  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33216445 gaatagtggaaaaacaaagaagtttgaagttttgtattgatgaatagagaaggttctgtctgaggtttgtgttcagtttgttttgtttctatataaactg 33216346  T
Q  108 aaaaaatcactgtcttctgttaaacattgatagcaatggcatatcattgtaagtgatataacaaaataaagcataaggacaaaaatggtagaatagtaga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  33216345 aaaaaatcactgtcttctgttaaacattgatagcaatggcatatcattgtaagtggtataacaaaataaagcataaggacaaaaatgggagaatagtaga 33216246  T
Q  208 ttatggtaaaaacaaaatatatggaatag 236  Q
    |||||||||||||||||||||||||||||    
T  33216245 ttatggtaaaaacaaaatatatggaatag 33216217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 502 - 591
Target Start/End: Original strand, 1127224 - 1127313
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 591  Q
    |||||||| ||||||| ||||| ||| || |||   |||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  1127224 agagttttctcaatttttggtgtattccgaaacactattttcacaaatttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 1127313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 502 - 599
Target Start/End: Complemental strand, 27822238 - 27822140
Alignment:
Q  502 agagttttt-tcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    ||||||||| ||||||||||||||||| ||||||    |||||||| |||||||||||| ||||||||| |||||  || |||||||||||||||||||    
T  27822238 agagtttttctcaatttctggtggatttcggaaccctgttttcacaagtttgtcgcttgaaaacttgttccttttctatttaggtttagcgtttgctag 27822140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 506 - 599
Target Start/End: Original strand, 14238410 - 14238503
Alignment:
Q  506 ttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    |||||| | |||||| |||| | |||||| | ||||||||| |||||||||||||||||||||||||||| ||| || |||||| |||||||||    
T  14238410 tttttttattttctgatggactccggaaccttattttcacaagtttgtcgcttgcaaacttgtttcttttcaatttatgtttagtgtttgctag 14238503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 502 - 584
Target Start/End: Complemental strand, 8049084 - 8049003
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctagg 584  Q
    |||||||| ||||||||||||||||  |||| | | ||||||||| ||||||| ||||||||||| |||||||||||||||||    
T  8049084 agagttttctcaatttctggtggatcccggagccttattttcacaagtttgtcacttgcaaactt-tttctttttaatctagg 8049003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 502 - 599
Target Start/End: Complemental strand, 18727964 - 18727865
Alignment:
Q  502 agagttttttcaatttctggtggattacggaa-cttgattttcacaggtttgtcgcttgcaaacttgtttcttttt-aatctaggtttagcgtttgctag 599  Q
    |||||||| ||||||||||||||||| ||||| |||  ||||||| | ||| | |||||||||||| |||||||||  ||||| ||||||||||||||||    
T  18727964 agagttttctcaatttctggtggatttcggaaccttatttttcaccgatttattgcttgcaaacttatttctttttctatctaagtttagcgtttgctag 18727865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 502 - 599
Target Start/End: Original strand, 12882092 - 12882190
Alignment:
Q  502 agagttttt-tcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    ||||||||| ||||||||||||||||| || |||   ||||||||| |||||||||||  |||||||| |||| | |||||||||| || |||||||||    
T  12882092 agagtttttctcaatttctggtggattccgaaaccctattttcacaagtttgtcgctttaaaacttgtctcttctcaatctaggttcagtgtttgctag 12882190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 538 - 598
Target Start/End: Original strand, 3536040 - 3536099
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  3536040 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 3536099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 539 - 599
Target Start/End: Original strand, 18727115 - 18727174
Alignment:
Q  539 ttttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    |||||||| ||||||||||||| ||||||| | |||| |||||||||||||||||||||||    
T  18727115 ttttcacaagtttgtcgcttgcgaacttgtgt-ttttcaatctaggtttagcgtttgctag 18727174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 502 - 598
Target Start/End: Original strand, 11658901 - 11658997
Alignment:
Q  502 agagttttt-tcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| ||||||| ||||||||| |  ||||  ||||||||| |||| ||||||||||| ||| ||||||| ||||||||||||| | ||||||    
T  11658901 agagtttttctcaatttttggtggattccaaaactctattttcacaagtttatcgcttgcaaatttg-ttcttttcaatctaggtttagtgcttgcta 11658997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 591
Target Start/End: Complemental strand, 29340889 - 29340837
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 591  Q
    ||||||||| ||||||||||||||||||||||| ||||  ||||||||||||||    
T  29340889 attttcacaagtttgtcgcttgcaaacttgttt-ttttctatctaggtttagcg 29340837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 591
Target Start/End: Original strand, 30052209 - 30052261
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 591  Q
    ||||||||| |||||||||||||||||||| |||||||  ||||||||||||||    
T  30052209 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcg 30052261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 502 - 587
Target Start/End: Complemental strand, 33615623 - 33615538
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttt 587  Q
    |||||||||||||||| ||||| |||  | |||   ||||||||| ||||||||||||||||||||||  ||||  ||||||||||    
T  33615623 agagttttttcaatttatggtgaattctgaaaccctattttcacaagtttgtcgcttgcaaacttgttctttttctatctaggttt 33615538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 587
Target Start/End: Complemental strand, 33693910 - 33693861
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttt 587  Q
    |||||||||||||||| ||||||||| ||||||||||| |||||| ||||    
T  33693910 attttcacaggtttgttgcttgcaaatttgtttcttttcaatctatgttt 33693861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 538 - 598
Target Start/End: Original strand, 3542251 - 3542310
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| ||||||||||| |||||||| |||||||  |||||||||||||| ||||||    
T  3542251 attttcacaagtttgtcgcttacaaacttg-ttcttttctatctaggtttagcgcttgcta 3542310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 538 - 598
Target Start/End: Original strand, 30049922 - 30049981
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| |||||||||||||||||||| |||||||  || ||||||||||| ||||||    
T  30049922 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatataggtttagcgcttgcta 30049981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 588
Target Start/End: Original strand, 22873801 - 22873870
Alignment:
Q  519 tggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 588  Q
    ||||||||| |||||| |   ||||||| ||||||||| ||||||||||| |||||| ||| ||||||||    
T  22873801 tggtggattccggaacctttatttcacaagtttgtcgcatgcaaacttgtctcttttcaatttaggttta 22873870  T

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Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 502 - 590
Target Start/End: Original strand, 24840113 - 24840201
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagc 590  Q
    |||||||| ||||||||||||||||| ||||||   ||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  24840113 agagttttctcaatttctggtggattccggaaccctattttcacaagtttgtcgcttgcaaacttgtttcttttcaatctaggtttagc 24840201  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 501 - 599
Target Start/End: Original strand, 1369774 - 1369872
Alignment:
Q  501 tagagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    ||||||||| ||||||||||||||||| ||||||   ||||| ||| |||| ||||||||||||||||||||||| |||||||||||| || |||||||    
T  1369774 tagagttttctcaatttctggtggattccggaaccctattttaacaagtttatcgcttgcaaacttgtttcttttcaatctaggtttaacgcttgctag 1369872  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 502 - 591
Target Start/End: Complemental strand, 6451869 - 6451780
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 591  Q
    |||||||||||||||| || |||||| || ||| | |||||||||||||||||||||||||||||||||| ||| ||||||| |||||||    
T  6451869 agagttttttcaatttttgttggattccgaaaccttattttcacaggtttgtcgcttgcaaacttgtttcctttcaatctagatttagcg 6451780  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 502 - 588
Target Start/End: Original strand, 27142636 - 27142722
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 588  Q
    |||||||| |||||||||||||| ||  |||||   ||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  27142636 agagttttctcaatttctggtggtttcaggaaccctattttcacaagtttgtcgcttgcaaacttgtttcttttcaatctaggttta 27142722  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 502 - 599
Target Start/End: Complemental strand, 11000945 - 11000848
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    ||||||||  |||||||||||||||| | ||||   ||||||||  ||||||||||||| |||||||||||||| ||||||||||||||| |||||||    
T  11000945 agagttttcccaatttctggtggattcctgaaccctattttcactagtttgtcgcttgcgaacttgtttcttttcaatctaggtttagcgcttgctag 11000848  T

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Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 507 - 591
Target Start/End: Complemental strand, 4888799 - 4888716
Alignment:
Q  507 tttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 591  Q
    ||||||||||||||||| ||| |||||||  |||||||||||||||||||||||||||||| |||||||  ||||||||| ||||    
T  4888799 tttttcaatttctggtgaattccggaactctattttcacaggtttgtcgcttgcaaacttg-ttcttttctatctaggttcagcg 4888716  T

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Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 538 - 598
Target Start/End: Complemental strand, 27309698 - 27309638
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  27309698 attttcacaagtttgtcgcttgcaaacttgtttcttttcaatctaggtttagcgcttgcta 27309638  T

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Target: chr7; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 538 - 599
Target Start/End: Original strand, 1883495 - 1883556
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    ||||||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||||||    
T  1883495 attttcacaagtttgtcgtttgcaaacttgtttcttttcaatctaggtttagtgtttgctag 1883556  T

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Target: chr7; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 538 - 599
Target Start/End: Original strand, 5934610 - 5934671
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    ||||||||| |||||||||||||||| ||||||||||| ||||||||||||||| |||||||    
T  5934610 attttcacaagtttgtcgcttgcaaatttgtttcttttcaatctaggtttagcgcttgctag 5934671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 538 - 590
Target Start/End: Complemental strand, 1753681 - 1753629
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagc 590  Q
    ||||||||| |||||||||||||||||||||||||||| ||| ||||||||||    
T  1753681 attttcacaagtttgtcgcttgcaaacttgtttcttttcaatttaggtttagc 1753629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 538 - 598
Target Start/End: Original strand, 1874544 - 1874604
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| |||||||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  1874544 attttcacaagtttgtcgtttgcaaacttgtttcttttcaatcaaggtttagtgtttgcta 1874604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 502 - 590
Target Start/End: Original strand, 11228951 - 11229039
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagc 590  Q
    |||||||| |||||||||||||||||  |||||    |||||||| ||||||||| ||||||||||||  |||| ||||||||||||||    
T  11228951 agagttttatcaatttctggtggattctggaacccttttttcacacgtttgtcgcctgcaaacttgttctttttcaatctaggtttagc 11229039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 460
Target Start/End: Complemental strand, 18790429 - 18790362
Alignment:
Q  393 ttttaataatttatgttgtattttctgttctagtttttcggttcattagggtttccttagtgtttaaa 460  Q
    |||||||||||| |||| ||||||||||| | | ||||||||||||||||||||| ||||| ||||||    
T  18790429 ttttaataatttttgttttattttctgttttggattttcggttcattagggtttctttagtatttaaa 18790362  T

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Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 502 - 588
Target Start/End: Complemental strand, 8916496 - 8916410
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 588  Q
    |||||||| ||||||||||||||||| | |||||  |||| |||| |||| ||| |||||||||||||  |||| ||||||||||||    
T  8916496 agagttttctcaatttctggtggattccagaactctatttccacaagtttatcgtttgcaaacttgttcattttaaatctaggttta 8916410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 502 - 599
Target Start/End: Original strand, 11228690 - 11228788
Alignment:
Q  502 agagttttttcaattt-ctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    |||||||| ||||||| ||||||||||   ||||   |||| |||| ||||||||||| ||||||||||||||||| ||| |||||||| |||||||||    
T  11228690 agagttttctcaattttctggtggattctagaaccctatttccacaagtttgtcgcttccaaacttgtttcttttttatcaaggtttagtgtttgctag 11228788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 511 - 599
Target Start/End: Original strand, 30217794 - 30217880
Alignment:
Q  511 tcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    |||||| |||||||||| | |||||  ||||||||| ||||||||||||| ||||||||   ||| ||||||||||||||| |||||||    
T  30217794 tcaattactggtggatttcagaactctattttcacaagtttgtcgcttgcgaacttgtt--ctttcaatctaggtttagcgcttgctag 30217880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 538 - 598
Target Start/End: Complemental strand, 859239 - 859180
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  859239 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 859180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 538 - 598
Target Start/End: Complemental strand, 1217243 - 1217184
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  1217243 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 1217184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 538 - 598
Target Start/End: Complemental strand, 13882769 - 13882710
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  13882769 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 13882710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 538 - 598
Target Start/End: Complemental strand, 13886242 - 13886183
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  13886242 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 13886183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 569
Target Start/End: Complemental strand, 3778823 - 3778760
Alignment:
Q  506 ttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtt 569  Q
    |||| ||||||||||||||||| ||||||   ||||||||| |||| |||||||||||||||||    
T  3778823 ttttctcaatttctggtggattccggaaccctattttcacaagtttctcgcttgcaaacttgtt 3778760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 502 - 599
Target Start/End: Original strand, 1365641 - 1365738
Alignment:
Q  502 agagttttt-tcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    ||||||||| ||||||| |||||||||| |||||   ||||||||| |||  |||||| |||||||||| ||||  ||||||||||||||| |||||||    
T  1365641 agagtttttctcaatttttggtggattatggaaccctattttcacaagttcatcgcttacaaacttgttcctttc-aatctaggtttagcgcttgctag 1365738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 406
Target Start/End: Complemental strand, 1785675 - 1785621
Alignment:
Q  353 tgatgtaggatggtttctttagtattatta-ttgagcctaattttaataatttat 406  Q
    ||||||| || ||||||||||||||||||| || |||||||||||||||||||||    
T  1785675 tgatgtatgagggtttctttagtattattatttcagcctaattttaataatttat 1785621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 599
Target Start/End: Complemental strand, 4133394 - 4133296
Alignment:
Q  501 tagagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    ||||||||| ||||||||| | ||||| | |||||  ||||||||| |||||||||||| ||| |||||  | || |||||| ||||||| ||||||||    
T  4133394 tagagttttctcaatttctaggggatttcagaactctattttcacaagtttgtcgcttgaaaatttgttcatcttcaatctaagtttagcatttgctag 4133296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 557 - 599
Target Start/End: Original strand, 13466756 - 13466798
Alignment:
Q  557 ttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    ||||||||||||||||||||||| ||||||||||| |||||||    
T  13466756 ttgcaaacttgtttctttttaatataggtttagcgcttgctag 13466798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 519 - 588
Target Start/End: Complemental strand, 7803133 - 7803064
Alignment:
Q  519 tggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 588  Q
    ||||||||| |||||| | ||||||| | |||||| |||||||||||||||||||||  | |||||||||    
T  7803133 tggtggattccggaaccttattttcataagtttgttgcttgcaaacttgtttcttttcgacctaggttta 7803064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 502 - 590
Target Start/End: Original strand, 1786653 - 1786741
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagc 590  Q
    ||||||||  ||||||||| ||||||  |||||   |||||| || ||||||||||||||||||||||  ||||  |||||||||||||    
T  1786653 agagttttcgcaatttctgatggattctggaaccctattttcgcatgtttgtcgcttgcaaacttgttatttttctatctaggtttagc 1786741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 599
Target Start/End: Original strand, 35814841 - 35814937
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    |||||||| ||||||| |||| ||||   |||| | ||||| ||| |||||||||||||||| ||| ||| ||| ||||||| ||||| |||||||||    
T  35814841 agagttttctcaatttatggtagattcaagaaccttatttttacaagtttgtcgcttgcaaagttggttc-tttcaatctagatttagtgtttgctag 35814937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 538 - 598
Target Start/End: Complemental strand, 1220523 - 1220464
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| |||||||| ||||||||||| ||| |||  || ||||||||||||||||||    
T  1220523 attttcacaagtttgtcgtttgcaaacttg-ttcatttctatgtaggtttagcgtttgcta 1220464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 502 - 599
Target Start/End: Original strand, 23457616 - 23457713
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    |||||||| ||||||| ||||||||| ||||||   ||||||||| ||||||||||||||||||||||| |||| ||||||||||||||| |||||||    
T  23457616 agagttttctcaatttttggtggattccggaaccctattttcacaagtttgtcgcttgcaaacttgtttattttcaatctaggtttagcgcttgctag 23457713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 502 - 588
Target Start/End: Original strand, 23456545 - 23456631
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 588  Q
    |||||||| ||| |||| |||||||| | |||||| ||||||| | |||||||||||||||||||||||||||| ||| ||||||||    
T  23456545 agagttttctcagtttccggtggattccagaactttattttcaaaagtttgtcgcttgcaaacttgtttcttttcaatataggttta 23456631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 504 - 597
Target Start/End: Complemental strand, 32162086 - 32161993
Alignment:
Q  504 agttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgct 597  Q
    |||||| ||| ||||||||||||| | ||||   ||||||||| ||||||| ||||||||||||||||||||  ||||||||||| || |||||    
T  32162086 agttttctcagtttctggtggattcctgaaccctattttcacaagtttgtcacttgcaaacttgtttcttttcgatctaggtttaacgcttgct 32161993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 502 - 599
Target Start/End: Original strand, 33051588 - 33051685
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    |||||||| ||||||||| ||||||| | ||||   ||||||| | ||||||||||||||||||||||  |||| ||| ||||||||||| |||||||    
T  33051588 agagttttctcaatttctagtggattccagaaccctattttcaaaagtttgtcgcttgcaaacttgttctttttcaatttaggtttagcgcttgctag 33051685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 502 - 591
Target Start/End: Complemental strand, 5171704 - 5171615
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 591  Q
    |||||||| ||||||||| |||||||   ||||   ||||| ||| ||||||||||||||||||||| |||||| ||||||| |||||||    
T  5171704 agagttttctcaatttctagtggattcttgaaccctatttttacaagtttgtcgcttgcaaacttgtctcttttcaatctagatttagcg 5171615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 500 - 569
Target Start/End: Original strand, 8294546 - 8294615
Alignment:
Q  500 ttagagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtt 569  Q
    ||||||||||||||||||||||||||||| | |||   ||||| ||| ||||||||||||||||| ||||    
T  8294546 ttagagttttttcaatttctggtggattatgaaacactatttttacaagtttgtcgcttgcaaacgtgtt 8294615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 599
Target Start/End: Original strand, 36647299 - 36647359
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    ||||||||| |||||||||||||||||||| ||||||| |||| |||||||||| |||||||    
T  36647299 attttcacaagtttgtcgcttgcaaacttg-ttcttttcaatcgaggtttagcgcttgctag 36647359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 502 - 598
Target Start/End: Original strand, 21772345 - 21772440
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    |||||||| ||||||| || ||||||  |||||   ||||||| | ||||||||||||||||||||||| |||| |||||| |||||||||| ||||    
T  21772345 agagttttctcaatttgtgatggattcaggaaccctattttcataagtttgtcgcttgcaaacttgttt-ttttcaatctaagtttagcgttggcta 21772440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 538 - 598
Target Start/End: Complemental strand, 27952401 - 27952342
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  27952401 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 27952342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 538 - 598
Target Start/End: Complemental strand, 27956237 - 27956178
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||| |||||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  27956237 attttcataggtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 27956178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 538 - 598
Target Start/End: Original strand, 31634110 - 31634169
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| |||||||||| ||||||||| |||||||  |||||||||||||||||||||    
T  31634110 attttcacaagtttgtcgctagcaaacttg-ttcttttctatctaggtttagcgtttgcta 31634169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 576
Target Start/End: Complemental strand, 12124011 - 12123941
Alignment:
Q  506 ttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttcttttt 576  Q
    |||| ||||||| ||||||||| | ||||   |||||||||||||||||||||||||||||| || |||||    
T  12124011 ttttctcaatttttggtggattcctgaaccatattttcacaggtttgtcgcttgcaaacttgatttttttt 12123941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 502 - 582
Target Start/End: Original strand, 4184898 - 4184979
Alignment:
Q  502 agagttttt-tcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatcta 582  Q
    ||||||||| ||||||||| ||||||| || |||   ||||||||| ||||||||||||| ||||| |||||||| ||||||    
T  4184898 agagtttttctcaatttctcgtggattccgaaaccctattttcacaagtttgtcgcttgcgaacttatttcttttgaatcta 4184979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 599
Target Start/End: Original strand, 15129396 - 15129456
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    ||||||||| ||||||||||||| |||||| |||||||  |||||||||||||| |||||||    
T  15129396 attttcacaagtttgtcgcttgcgaacttg-ttcttttctatctaggtttagcgcttgctag 15129456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 513 - 598
Target Start/End: Original strand, 18945941 - 18946026
Alignment:
Q  513 aatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||||| ||| |||||||   || ||||| |||||||||||||||| || |||||| | |||||| |||||||| ||||||    
T  18945941 aatttctggtgaattccggaactctgttctcacaagtttgtcgcttgcaaatttatttcttctcaatctacgtttagcgcttgcta 18946026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 538 - 598
Target Start/End: Original strand, 2155973 - 2156032
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| |||||||||| ||||||||| |||||||  |||||||||||||| ||||||    
T  2155973 attttcacaagtttgtcgctcgcaaacttg-ttcttttctatctaggtttagcgcttgcta 2156032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 538 - 598
Target Start/End: Original strand, 22011442 - 22011501
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| ||||||| |||||||||||| |||||||  |||||||||||||| ||||||    
T  22011442 attttcacaagtttgtcacttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 22011501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 550 - 598
Target Start/End: Original strand, 29715168 - 29715216
Alignment:
Q  550 ttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||||||||||| ||| |||| ||||||||||||| ||||||||    
T  29715168 ttgtcgcttgcaaacttttttattttcaatctaggtttagagtttgcta 29715216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 538 - 598
Target Start/End: Original strand, 31636343 - 31636402
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| |||||||||||||||||| | |||||||  |||||||||||||| ||||||    
T  31636343 attttcacaagtttgtcgcttgcaaactag-ttcttttctatctaggtttagcgcttgcta 31636402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 538 - 598
Target Start/End: Original strand, 33655634 - 33655693
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| ||||||||||||||||||||| | ||||  |||||||||||||| ||||||    
T  33655634 attttcacaagtttgtcgcttgcaaacttgtat-ttttctatctaggtttagcgcttgcta 33655693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 588
Target Start/End: Complemental strand, 32163854 - 32163804
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 588  Q
    ||||||||| ||||| ||||| ||||||| |||||||| ||||||||||||    
T  32163854 attttcacaagtttgacgcttacaaacttatttcttttcaatctaggttta 32163804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 565
Target Start/End: Original strand, 36615178 - 36615243
Alignment:
Q  502 agagttttttc--aatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaact 565  Q
    |||||||||||  ||||||||||||||| |||||| | ||||| |||  |||||||||||||||||    
T  36615178 agagttttttcttaatttctggtggattccggaaccttatttttacaattttgtcgcttgcaaact 36615243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 599
Target Start/End: Original strand, 28737912 - 28737972
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    ||||||| | ||||||||||||||||||||  |||||| ||||||||||||||  |||||||    
T  28737912 attttcaaaagtttgtcgcttgcaaacttg-ctcttttcaatctaggtttagcacttgctag 28737972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 502 - 587
Target Start/End: Original strand, 10494873 - 10494958
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttt 587  Q
    |||||||| ||||||||||||| ||| |||||||  ||||||||||||||||| ||||||||||||||||||||  ||||||||||    
T  10494873 agagttttctcaatttctggtgaattccggaactctattttcacaggtttgtcacttgcaaacttgtttcttttccatctaggttt 10494958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 502 - 599
Target Start/End: Complemental strand, 13991498 - 13991401
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    |||||||| |||| |||||||||||| | |||| | |||||| || |||||||||||||||||||||||||||| ||||||| ||||||| |||||||    
T  13991498 agagttttctcaaattctggtggattccagaaccttattttcgcatgtttgtcgcttgcaaacttgtttcttttcaatctagatttagcgcttgctag 13991401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 502 - 597
Target Start/End: Original strand, 15848375 - 15848469
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgct 597  Q
    |||||||| ||||||| ||||||||| |||||||   ||||||||  |||||| ||||||| |||||||||||| ||||||| |||||||||||||    
T  15848375 agagttttctcaatttttggtggatttcggaactctcttttcacaattttgtcacttgcaa-cttgtttcttttcaatctagatttagcgtttgct 15848469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 502 - 588
Target Start/End: Original strand, 7634050 - 7634136
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 588  Q
    |||||||| ||||||||||||||||| | |||||  |||| |||| |||| ||| ||||||||||||| ||||| ||||||||||||    
T  7634050 agagttttctcaatttctggtggattccagaactctatttccacaagtttatcgtttgcaaacttgttccttttcaatctaggttta 7634136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 501 - 591
Target Start/End: Complemental strand, 18689641 - 18689551
Alignment:
Q  501 tagagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 591  Q
    ||||||||| |||||||||||||||||  | |||   ||||| ||| ||||||||| ||||||||| |||||||| |||||||||||||||    
T  18689641 tagagttttctcaatttctggtggattctgcaaccctatttttacaagtttgtcgcatgcaaacttttttcttttcaatctaggtttagcg 18689551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 542 - 599
Target Start/End: Complemental strand, 54700676 - 54700619
Alignment:
Q  542 tcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    ||||| ||||||| |||||||||||||||||||| ||| |||||||||||||||||||    
T  54700676 tcacaagtttgtcacttgcaaacttgtttcttttcaatataggtttagcgtttgctag 54700619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 502 - 599
Target Start/End: Complemental strand, 7724193 - 7724099
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    |||||||| ||||||||||||||||| ||||||   |||||||   |||||||||| ||||||||| ||||||| ||| ||||||||||  |||||||    
T  7724193 agagttttctcaatttctggtggattccggaaccctattttca---gtttgtcgctcgcaaacttgcttcttttcaatataggtttagcacttgctag 7724099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 501 - 599
Target Start/End: Complemental strand, 17255003 - 17254905
Alignment:
Q  501 tagagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    ||||||||| ||||||||| | ||||| | |||||  ||||||||| |||||||||||| ||| |||||  | || |||||| ||||||||||||||||    
T  17255003 tagagttttctcaatttctaggggatttcagaactctattttcacaagtttgtcgcttgaaaatttgttcatcttcaatctaagtttagcgtttgctag 17254905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 502 - 599
Target Start/End: Complemental strand, 22486893 - 22486798
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    |||||||| ||||||||||||||||| |||||| | ||||||||| | |||||||||||||||||| |  ||||  || ||||||||||| |||||||    
T  22486893 agagttttctcaatttctggtggattccggaacct-attttcacaag-ttgtcgcttgcaaacttggtctttttctatataggtttagcgcttgctag 22486798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 595
Target Start/End: Complemental strand, 38888073 - 38888016
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttg 595  Q
    ||||||||| |||||||||||||||| |||||| |||| |||||||||||| ||||||    
T  38888073 attttcacaagtttgtcgcttgcaaatttgtttattttcaatctaggtttaacgtttg 38888016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 502 - 598
Target Start/End: Complemental strand, 53477333 - 53477235
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttcttt--ttaatctaggtttagcgtttgcta 598  Q
    |||||||| |||||||||||||||||    |||   ||||||||||||||| |||||| |||||||||| |||  |  |||||||||||||||||||||    
T  53477333 agagttttctcaatttctggtggattctaaaaccccattttcacaggtttgacgcttgtaaacttgtttttttactctatctaggtttagcgtttgcta 53477235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 599
Target Start/End: Complemental strand, 50515978 - 50515917
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    ||||||||| |||||||||||||||||||||||||| | | |||| || ||||| |||||||    
T  50515978 attttcacaagtttgtcgcttgcaaacttgtttcttctcagtctaagtgtagcgcttgctag 50515917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 502 - 582
Target Start/End: Original strand, 3675081 - 3675161
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatcta 582  Q
    |||||||| | ||||||||||||||| || ||||| | |||||  | ||| ||| ||||||||||||||||||| ||||||    
T  3675081 agagttttcttaatttctggtggattccgaaactttaatttcatggatttatcgtttgcaaacttgtttcttttcaatcta 3675161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 538 - 598
Target Start/End: Complemental strand, 6659413 - 6659354
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||| ||||||| ||||||    
T  6659413 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctagatttagcgcttgcta 6659354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 502 - 570
Target Start/End: Complemental strand, 13990796 - 13990728
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgttt 570  Q
    ||||||||||||||||||| |||||| | ||||   ||||||||| ||||||  |||||||||||||||    
T  13990796 agagttttttcaatttctgatggattccagaaccctattttcacaagtttgttacttgcaaacttgttt 13990728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 501 - 589
Target Start/End: Complemental strand, 18657162 - 18657074
Alignment:
Q  501 tagagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttag 589  Q
    ||||||||| |||||||| ||||||||  | ||    ||||| ||| ||||||||| ||||||||| |||||||| |||||||||||||    
T  18657162 tagagttttctcaatttccggtggattctgaaatcctatttttacaagtttgtcgcatgcaaacttttttcttttcaatctaggtttag 18657074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 453
Target Start/End: Complemental strand, 26974896 - 26974834
Alignment:
Q  391 aattttaataatttatgttgtattttctgttctagtttttcggttcattagggtttccttagt 453  Q
    |||||||||||||| |||| |||||||| || | ||||||  ||||||||| |||||||||||    
T  26974896 aattttaataatttttgttttattttctattttggttttttagttcattagagtttccttagt 26974834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 599
Target Start/End: Complemental strand, 7723745 - 7723686
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    ||||||||| |||||| ||||||||||||| ||||||| |||||| |||||||| |||||||    
T  7723745 attttcacaagtttgtagcttgcaaacttg-ttcttttcaatcta-gtttagcgcttgctag 7723686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 581
Target Start/End: Original strand, 9260545 - 9260622
Alignment:
Q  504 agttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatct 581  Q
    |||||| |||||||||||||||||  | |||   |||||| || |||||||| |||||||||||||||| || |||||    
T  9260545 agttttctcaatttctggtggattctgaaaccctattttcgcaagtttgtcgtttgcaaacttgtttctcttaaatct 9260622  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 599
Target Start/End: Original strand, 40206123 - 40206215
Alignment:
Q  506 ttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    |||| ||||||||||||| ||| || |||   ||||||||| ||||||||||||| ||||||| || ||| ||| ||| ||||||| |||||||    
T  40206123 ttttctcaatttctggtgaattccgaaacactattttcacaagtttgtcgcttgcgaacttgtctc-tttcaatttagatttagcgcttgctag 40206215  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 460
Target Start/End: Complemental strand, 53477453 - 53477384
Alignment:
Q  391 aattttaataatttatgttgtattttctgttctagtttttcggttcattagggtttccttagtgtttaaa 460  Q
    |||||||||||||| |||| |||||| |||| | | |||||||| |||||| ||||||||| | ||||||    
T  53477453 aattttaataatttctgttttattttatgttttggattttcggtccattagagtttccttaatatttaaa 53477384  T

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Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 515 - 598
Target Start/End: Complemental strand, 28660852 - 28660769
Alignment:
Q  515 tttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||||||| ||||||   ||||||||| |||||||||||||||||||||||||| |  |||||||||||||||||||||    
T  28660852 tttctggtggatttcggaaccctattttcacaagtttgtcgcttgcaaacttgtttcttatctatctaggtttagcgtttgcta 28660769  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 502 - 599
Target Start/End: Original strand, 10927164 - 10927259
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    |||||||| ||||||||||||||||| ||||||    |||||||| ||||||||||||||||||||||  |||| | |||||||||||||||||||||    
T  10927164 agagttttctcaatttctggtggattccggaaccc--ttttcacaagtttgtcgcttgcaaacttgttctttttcagtctaggtttagcgtttgctag 10927259  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 502 - 599
Target Start/End: Original strand, 12944086 - 12944183
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    |||||||| ||||||||||||||||| | ||||   ||||| ||| |||||||| ||||||||||||||||||| ||||||| ||||||| |||||||    
T  12944086 agagttttctcaatttctggtggattccagaaccctatttttacaagtttgtcgtttgcaaacttgtttcttttcaatctagatttagcgcttgctag 12944183  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 502 - 574
Target Start/End: Original strand, 31915519 - 31915592
Alignment:
Q  502 agagttttt-tcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttcttt 574  Q
    ||||||||| ||||||||||||||||| ||||||   ||||||||| |||||||||||||||||||||||||||    
T  31915519 agagtttttctcaatttctggtggattccggaaccctattttcacaagtttgtcgcttgcaaacttgtttcttt 31915592  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 502 - 591
Target Start/End: Original strand, 50713683 - 50713772
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 591  Q
    |||||||| ||||||||||||||||| || |||   ||||||||| ||||||||| ||| ||||||| |||||| |||||||||||||||    
T  50713683 agagttttctcaatttctggtggattccgaaaccctattttcacaagtttgtcgcctgcgaacttgtctcttttcaatctaggtttagcg 50713772  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 502 - 599
Target Start/End: Original strand, 10928259 - 10928356
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    |||||||| ||||||| | ||||||| || ||| | ||||||||| ||||||| ||| ||||||| | |||||||||||||||||||||  |||||||    
T  10928259 agagttttctcaatttatagtggattccgaaaccttattttcacaagtttgtcacttacaaacttatatctttttaatctaggtttagcacttgctag 10928356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 504 - 599
Target Start/End: Original strand, 43681433 - 43681529
Alignment:
Q  504 agttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttcttttt-aatctaggtttagcgtttgctag 599  Q
    |||||| | |||||||||| ||||  ||| ||  |||||||||  |||||||||||||||||||||| ||||| ||||||||||||||| |||||||    
T  43681433 agttttcttaatttctggtagattctggatctctattttcacaaatttgtcgcttgcaaacttgtttttttttcaatctaggtttagcgcttgctag 43681529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 501 - 584
Target Start/End: Complemental strand, 33152841 - 33152756
Alignment:
Q  501 tagagttttttc--aatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctagg 584  Q
    ||||||||||||  ||||||||||||||| ||||||   ||| ||  | |||||||||||||||||||||||||||| ||||||||    
T  33152841 tagagttttttcttaatttctggtggattccggaaccctattgtcgtaagtttgtcgcttgcaaacttgtttcttttcaatctagg 33152756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 514 - 599
Target Start/End: Original strand, 31913359 - 31913443
Alignment:
Q  514 atttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    |||||||||||||| |||||    ||||| ||| |||||||||||||||||||||||| ||| || |||||||||||| |||||||    
T  31913359 atttctggtggatttcggaaacctatttttacaagtttgtcgcttgcaaacttgtttc-tttcaacctaggtttagcgcttgctag 31913443  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 502 - 590
Target Start/End: Original strand, 8221458 - 8221546
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagc 590  Q
    |||||||| ||||||||||||||||| | ||||   ||||||| | |||||||| |||||||||||| ||| || ||||| ||||||||    
T  8221458 agagttttctcaatttctggtggattccagaaccctattttcataagtttgtcgtttgcaaacttgtctctattcaatcttggtttagc 8221546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 538 - 598
Target Start/End: Original strand, 8931226 - 8931285
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| |||| |||||||||||||||||| |||| ||||||||||||||| ||||||    
T  8931226 attttcacaagtttatcgcttgcaaacttgttt-ttttcaatctaggtttagcgcttgcta 8931285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 502 - 594
Target Start/End: Complemental strand, 9195061 - 9194970
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgttt 594  Q
    |||||||||||||||| ||||||||||  ||||   |||  |||| ||||||||||||||||||||||||  || |||||||||||| |||||    
T  9195061 agagttttttcaatttttggtggattattgaaccctattaacacatgtttgtcgcttgcaaacttgtttc-attcaatctaggtttaacgttt 9194970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 599
Target Start/End: Complemental strand, 28661151 - 28661090
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    ||||| |||||||| ||||||||||||||||||||| | ||| ||||||||||  |||||||    
T  28661151 atttttacaggtttttcgcttgcaaacttgtttcttatcaatttaggtttagcacttgctag 28661090  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 502 - 599
Target Start/End: Original strand, 10925710 - 10925804
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    ||||||||||||||||  |||||||| | ||||   ||||| ||| |||||||||||||||| ||||   |||| ||| ||||||||||| |||||||    
T  10925710 agagttttttcaattttcggtggattccagaaccatatttttacaagtttgtcgcttgcaaaattgt---ttttcaatttaggtttagcgcttgctag 10925804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 538 - 589
Target Start/End: Complemental strand, 13444071 - 13444021
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttag 589  Q
    ||||||||| |||||||||||||||||||| |||||||  ||||||||||||    
T  13444071 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttag 13444021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 8968081 - 8968031
Alignment:
Q  355 atgtaggatggtttctttagtattatta-ttgagcctaattttaataattt 404  Q
    |||||||| ||||||||||||||||||| || |||| ||||||||||||||    
T  8968081 atgtaggagggtttctttagtattattatttcagcccaattttaataattt 8968031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 502 - 599
Target Start/End: Complemental strand, 28659686 - 28659587
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttcttt--ttaatctaggtttagcgtttgctag 599  Q
    |||||||||| ||||||| ||||||  |||||    ||||||||| |||| || ||||||||||||||| |||  | ||| |||||||||| ||||||||    
T  28659686 agagtttttttaatttctagtggatatcggaatccaattttcacaagtttatcccttgcaaacttgttttttttatcaatataggtttagcatttgctag 28659587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 538 - 598
Target Start/End: Complemental strand, 50857527 - 50857468
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| ||||||||||| |||||||  |||||||  |||||||||||||| ||||||    
T  50857527 attttcacaagtttgtcgcttacaaactt-attcttttctatctaggtttagcgcttgcta 50857468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 502 - 599
Target Start/End: Original strand, 24731197 - 24731294
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    |||||||| |||||||||| || ||| || ||||  ||||||||| |||||| ||||||||||||||| ||||| ||||||||||||||| |||||||    
T  24731197 agagttttctcaatttctgatgaattccgaaactctattttcacaagtttgttgcttgcaaacttgttccttttcaatctaggtttagcgcttgctag 24731294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 502 - 598
Target Start/End: Complemental strand, 25479524 - 25479427
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttct-ttttaatctaggtttagcgtttgcta 598  Q
    |||||||| |||| |||||||||||| |||||| | ||||||| || |||||| ||||||| ||||||||| |||||| |||||||||||||||||||    
T  25479524 agagttttctcaaattctggtggattccggaaccttattttcaaagatttgtcacttgcaaccttgtttcttttttaacctaggtttagcgtttgcta 25479427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 502 - 588
Target Start/End: Original strand, 20693769 - 20693855
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 588  Q
    |||||||| |||||||||| |||||| ||||||   |||||||||  |||||||||||||||||||||| |||| ||||||||||||    
T  20693769 agagttttctcaatttctgatggattccggaaccatattttcacaaatttgtcgcttgcaaacttgtttattttcaatctaggttta 20693855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 502 - 588
Target Start/End: Original strand, 14130135 - 14130221
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 588  Q
    |||||||| ||||||||||||||||| |||||| | |||||||||  ||| |||||||||||||||| ||||||  |||||| ||||    
T  14130135 agagttttctcaatttctggtggattccggaaccttattttcacaaatttatcgcttgcaaacttgtctcttttcgatctagattta 14130221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 502 - 598
Target Start/End: Original strand, 16598218 - 16598315
Alignment:
Q  502 agagttttttcaattt-ctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    |||||||| ||||||| |||||| |||  |||||   ||||||||| ||||||||| ||||||||||||||||| ||||||| |||||||| ||||||    
T  16598218 agagttttctcaatttactggtgtattttggaaccctattttcacaagtttgtcgcgtgcaaacttgtttctttctaatctaagtttagcgcttgcta 16598315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 502 - 581
Target Start/End: Original strand, 2689117 - 2689195
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatct 581  Q
    |||||||| |||||||||| |||||  ||||||   |||||||||| ||||||||||||||||||||||||||| |||||    
T  2689117 agagttttctcaatttctg-tggatgccggaaccctattttcacagttttgtcgcttgcaaacttgtttcttttcaatct 2689195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 511 - 598
Target Start/End: Original strand, 18468628 - 18468714
Alignment:
Q  511 tcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||||||||||| ||||||   ||||||||| ||||||||||||||| |||| |||||||  | |||||||||||| ||||||    
T  18468628 tcaatttctggtggattccggaaccctattttcacaagtttgtcgcttgcaagcttg-ttcttttctacctaggtttagcgcttgcta 18468714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 500 - 599
Target Start/End: Complemental strand, 2189844 - 2189744
Alignment:
Q  500 ttagagttttttc--aatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgct 597  Q
    |||||||||||||  | ||| ||||||||| |  ||| | ||||||||| |||||||||||||||||||| ||||||| |||| |||||||||| |||||    
T  2189844 ttagagttttttctcattttttggtggattccaaaaccttattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatcgaggtttagcgcttgct 2189746  T
Q  598 ag 599  Q
    ||    
T  2189745 ag 2189744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 502 - 591
Target Start/End: Original strand, 2687712 - 2687801
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 591  Q
    |||||||| ||||||||| |||||||   ||||   ||||||||| ||||||||||||||||||||||  ||||  ||||||||||||||    
T  2687712 agagttttctcaatttcttgtggattctagaaccctattttcacaagtttgtcgcttgcaaacttgttctttttctatctaggtttagcg 2687801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 502 - 595
Target Start/End: Complemental strand, 24577647 - 24577554
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttg 595  Q
    |||||||| |||||||||||||||||||| |||   ||||||||| |||||||  |||||||||||| ||| || ||| || ||||| ||||||    
T  24577647 agagttttctcaatttctggtggattacgaaaccccattttcacatgtttgtcatttgcaaacttgtctctcttcaatataagtttatcgtttg 24577554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 502 - 591
Target Start/End: Complemental strand, 24578896 - 24578807
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 591  Q
    ||||||||  |||||||| ||||||| | ||||   |||||||||| |||  ||||||||||||||||||||||  ||||||||||||||    
T  24578896 agagttttcacaatttctagtggattccagaaccctattttcacagatttaccgcttgcaaacttgtttcttttcgatctaggtttagcg 24578807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 599
Target Start/End: Original strand, 42890398 - 42890458
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| |||||||    
T  42890398 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgctag 42890458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 599
Target Start/End: Complemental strand, 42891747 - 42891687
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| |||||||    
T  42891747 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgctag 42891687  T

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Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 538 - 598
Target Start/End: Original strand, 23570590 - 23570649
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  23570590 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 23570649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 591
Target Start/End: Complemental strand, 22926731 - 22926679
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 591  Q
    ||||||||| |||||||||||||||||||| |||||||  ||||||||||||||    
T  22926731 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcg 22926679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 599
Target Start/End: Original strand, 24731038 - 24731099
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    ||||||||| |||||| ||||||||||||||| ||||| ||||||  ||||||| |||||||    
T  24731038 attttcacaagtttgttgcttgcaaacttgttccttttcaatctaaatttagcgcttgctag 24731099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 502 - 599
Target Start/End: Original strand, 26374870 - 26374966
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    |||||||| | ||||||||||||||| || |||   ||||| ||| ||||||||||||| |||||| ||||||| |||||||| ||| || |||||||    
T  26374870 agagttttcttaatttctggtggatttcgaaaccctatttttacaagtttgtcgcttgcgaacttg-ttcttttcaatctaggcttaacgcttgctag 26374966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 538 - 598
Target Start/End: Complemental strand, 22512129 - 22512070
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| |||||||||||||||||||| |||||||  | |||||||||||| ||||||    
T  22512129 attttcacaagtttgtcgcttgcaaacttg-ttcttttctacctaggtttagcgcttgcta 22512070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 538 - 598
Target Start/End: Complemental strand, 22519429 - 22519370
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| |||||||||||||||||||| |||||||  | |||||||||||| ||||||    
T  22519429 attttcacaagtttgtcgcttgcaaacttg-ttcttttctacctaggtttagcgcttgcta 22519370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 538 - 598
Target Start/End: Complemental strand, 22921933 - 22921874
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| |||||||||||||||||||  |||||||  |||||||||||||| ||||||    
T  22921933 attttcacaagtttgtcgcttgcaaactt-attcttttctatctaggtttagcgcttgcta 22921874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 409
Target Start/End: Original strand, 2688971 - 2689026
Alignment:
Q  355 atgtaggatggtttctttagtattatta-ttgagcctaattttaataatttatgtt 409  Q
    |||||||| ||||||||||||||| ||| || ||||||||||||||||||| ||||    
T  2688971 atgtaggagggtttctttagtatttttatttcagcctaattttaataatttctgtt 2689026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 538 - 598
Target Start/End: Original strand, 6845342 - 6845401
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| |||| ||||||| ||||||||| |||||  |||||||||||||| ||||||    
T  6845342 attttcacaagtttatcgcttgtaaacttgtt-cttttctatctaggtttagcgcttgcta 6845401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 506 - 599
Target Start/End: Complemental strand, 2472803 - 2472711
Alignment:
Q  506 ttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    |||| ||||||||||||||||| ||||||   ||||||||| |||||||| |||||||||||| || ||| ||| ||||||||||| |||||||    
T  2472803 ttttctcaatttctggtggattccggaaccctattttcacaagtttgtcggttgcaaacttgtctc-tttcaatttaggtttagcgcttgctag 2472711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 538 - 598
Target Start/End: Complemental strand, 43304043 - 43303984
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  43304043 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 43303984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 591
Target Start/End: Original strand, 5128915 - 5128967
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 591  Q
    ||||||||| |||||||||||||||||||| |||||||  ||||||||||||||    
T  5128915 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcg 5128967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 502 - 574
Target Start/End: Complemental strand, 2107972 - 2107901
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttcttt 574  Q
    |||||||| ||||| ||||||||||| |||||| | ||||| ||| |||||| |||||||||| |||||||||    
T  2107972 agagttttctcaatctctggtggatt-cggaaccttatttttacaagtttgttgcttgcaaacctgtttcttt 2107901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 538 - 598
Target Start/End: Complemental strand, 43306755 - 43306696
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| |||||| ||||||||||||| |||||||  |||||||||||||| ||||||    
T  43306755 attttcacaagtttgttgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 43306696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 539 - 590
Target Start/End: Complemental strand, 45168401 - 45168351
Alignment:
Q  539 ttttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagc 590  Q
    |||||||| |||||||||||||||||||||||  ||| ||||||||||||||    
T  45168401 ttttcacaagtttgtcgcttgcaaacttgttt-atttcaatctaggtttagc 45168351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 599
Target Start/End: Original strand, 33175841 - 33175902
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    ||||||| | |||||||  |||||||||||| |||||| ||| |||||||| ||||||||||    
T  33175841 attttcataagtttgtcctttgcaaacttgtctcttttcaatataggtttatcgtttgctag 33175902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 538 - 598
Target Start/End: Complemental strand, 3063820 - 3063761
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| ||||||||||||||||| | ||||||||  ||||||||||| || ||||||    
T  3063820 attttcacaagtttgtcgcttgcaaac-tctttcttttctatctaggtttaacgcttgcta 3063761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 511 - 597
Target Start/End: Complemental strand, 46844 - 46758
Alignment:
Q  511 tcaatttctggtggattacggaac-ttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgct 597  Q
    ||||||| ||||||||| |||||| || ||||| | |||||||||||||||||||||| |||||||  |||||||||||||| |||||    
T  46844 tcaatttttggtggattccggaaccttaattttgataggtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgct 46758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 502 - 569
Target Start/End: Original strand, 18252386 - 18252453
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtt 569  Q
    |||||||| ||||||||| ||||||||  ||||   ||||||||||||||||||||||||||||||||    
T  18252386 agagttttctcaatttctagtggattatagaaccctattttcacaggtttgtcgcttgcaaacttgtt 18252453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 541 - 599
Target Start/End: Original strand, 492576 - 492634
Alignment:
Q  541 ttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    |||||| |||||||||||||||||||||||||||| ||||||  ||||||| |||||||    
T  492576 ttcacaagtttgtcgcttgcaaacttgtttcttttcaatctaaatttagcgcttgctag 492634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 598
Target Start/End: Complemental strand, 8456483 - 8456402
Alignment:
Q  517 tctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||||| |||||    ||||| ||| ||| ||||||||| |||||||||||||| ||||||||||||||| ||||||    
T  8456483 tctggtggatttcggaatcctatttttacaagttcgtcgcttgcgaacttgtttcttttcaatctaggtttagcgcttgcta 8456402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 502 - 598
Target Start/End: Original strand, 26140313 - 26140409
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    |||||||| ||||||| |||||||||   ||||   ||||||| | ||||||||||||||| |||||||  ||| ||||||| ||||||||||||||    
T  26140313 agagttttctcaatttttggtggattcttgaaccctattttcataagtttgtcgcttgcaatcttgttttctttcaatctagatttagcgtttgcta 26140409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 506 - 598
Target Start/End: Complemental strand, 19497419 - 19497327
Alignment:
Q  506 ttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    |||| ||||||| || |||||| ||||||   ||||||||| ||||||||||||||||||||||  |||||  ||||  ||||||| ||||||    
T  19497419 ttttctcaatttttgatggatttcggaaccctattttcacaagtttgtcgcttgcaaacttgttctttttttttctacatttagcgcttgcta 19497327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 538 - 598
Target Start/End: Complemental strand, 21849048 - 21848989
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||| ||| ||||||    
T  21849048 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttggcgcttgcta 21848989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 591
Target Start/End: Complemental strand, 40778869 - 40778817
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 591  Q
    ||||| ||| |||||||||||||||||||| |||||||  ||||||||||||||    
T  40778869 atttttacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcg 40778817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 538 - 598
Target Start/End: Complemental strand, 9868488 - 9868428
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 598  Q
    ||||||||| |||||| ||||| ||||||||||||||| ||| ||| |||| | |||||||    
T  9868488 attttcacaagtttgttgcttgtaaacttgtttcttttcaatatagatttaacatttgcta 9868428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 502 - 599
Target Start/End: Original strand, 9672 - 9770
Alignment:
Q  502 agagttttttcaatttctggtggattacggaacttgattttcaca--ggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    |||||||| ||||||||||||||||| ||||||   |||||||||   ||| |||||||| ||||||| ||||||| |||||||||||| || |||||||    
T  9672 agagttttctcaatttctggtggatttcggaaccctattttcacaagtgttagtcgcttggaaacttg-ttcttttcaatctaggtttaccgcttgctag 9770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 513 - 591
Target Start/End: Original strand, 37693 - 37769
Alignment:
Q  513 aatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 591  Q
    |||||||||| ||||  ||||| | ||||||| | |||||||||||||||||||| ||||||| |||||||||||||||    
T  37693 aatttctggtcgattttggaacct-attttcataagtttgtcgcttgcaaacttg-ttcttttcaatctaggtttagcg 37769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 506 - 599
Target Start/End: Original strand, 1632 - 1724
Alignment:
Q  506 ttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    |||| |||| |||||||||||| | ||||   ||||| ||| |||||||| ||||||||||||||| ||| |||||||||||| || |||||||    
T  1632 ttttctcaaattctggtggattccagaaccatattttgacaagtttgtcgtttgcaaacttgtttc-tttcaatctaggtttaacgcttgctag 1724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 550 - 599
Target Start/End: Original strand, 145752 - 145801
Alignment:
Q  550 ttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    |||||||||||||||||| || |||| ||||||||||||||| |||||||    
T  145752 ttgtcgcttgcaaacttgatttttttcaatctaggtttagcgattgctag 145801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 584
Target Start/End: Complemental strand, 11671 - 11626
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctagg 584  Q
    ||||||||| ||||||| ||||||||||| |||||||||||||||||    
T  11671 attttcacaagtttgtcacttgcaaactt-tttctttttaatctagg 11626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 599
Target Start/End: Original strand, 17646 - 17706
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 599  Q
    ||||| ||| |||||||| ||||||||||||||| ||| |||||||||||| || |||||||    
T  17646 attttgacaagtttgtcgtttgcaaacttgtttc-tttcaatctaggtttaacgcttgctag 17706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 538 - 594
Target Start/End: Original strand, 16404 - 16459
Alignment:
Q  538 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgttt 594  Q
    |||||| || ||||||||||||||||||  ||| |||||||||||||||||| ||||    
T  16404 attttctcaagtttgtcgcttgcaaactcattt-tttttaatctaggtttagtgttt 16459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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