View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4406-Insertion-7 (Length: 581)
Name: NF4406-Insertion-7
Description: NF4406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4406-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 512; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 5 - 520
Target Start/End: Complemental strand, 9011383 - 9010868
Alignment:
| Q |
5 |
acacaaaccttgtgaaattcgtgtgaacaaggaagcacacgaatttcatctttgttgtttaacattgacaagcatacacaacacaaaccaacatcatttg |
104 |
Q |
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| T |
9011383 |
acacaaaccttgtgaaattcgtgtgaacaaggaagcacacgaatttcatctttgttgtttaacattgacaagcatacacaacacaaaccaacatcatttg |
9011284 |
T |
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| Q |
105 |
ttgttgatgaagattctgatgattgttgattggtcttgtttgggacaattgaggtggcaacaatgtaaggtaaaattgcatcattgtttgtttgggtttc |
204 |
Q |
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| T |
9011283 |
ttgttgatgaagattctgatgattgttgattggtcttgtttgggacaattgaggtggcaacaatgtaaggtaaaattgcatcattgtttgtttgggtttc |
9011184 |
T |
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| Q |
205 |
tgctagaccaattaaattgaagataagtgatacaaagccttggagtgtcatcttaatttttgaagggtaagcatctctattagatccttattaagaaatt |
304 |
Q |
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| T |
9011183 |
tgctaggccaattaaattgaagataagtgatacaaagccttggagtgtcatcttaatttttgaagggtaagcatctctattagatccttattaagaaatt |
9011084 |
T |
|
| Q |
305 |
gagtgttaactaatgggtcttattgtcacaattataggtagtgtttagtcatatagcttggtttgaaagggtggttagatgtaaggtttctgcgacagtt |
404 |
Q |
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| T |
9011083 |
gagtgttaactaatgggtcttattgtcacaattataggtagtgtttagtcatatagcttggtttgaaagggtggttagatgtaaggtttctgcgacagtt |
9010984 |
T |
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| Q |
405 |
tctagggtccaaacatgatgtggttataccaacataagagtgttactcttgacctatatatataaactactggatgcctaacttgtctatagtatatgta |
504 |
Q |
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| T |
9010983 |
tctagggtccaaacatgatgtggttataccaacataagagtgttactcttgacctatatatataaactactggatgcctaacttgtctatagtatatgta |
9010884 |
T |
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| Q |
505 |
ctcgtgctagattata |
520 |
Q |
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| T |
9010883 |
ctcgtgctagattata |
9010868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 550 - 581
Target Start/End: Complemental strand, 9010838 - 9010807
Alignment:
| Q |
550 |
actttcctaattatgttaatatattcttgtca |
581 |
Q |
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| T |
9010838 |
actttcctaattatgttaatatattcttgtca |
9010807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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