View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4406-Insertion-8 (Length: 440)
Name: NF4406-Insertion-8
Description: NF4406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4406-Insertion-8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 7 - 440
Target Start/End: Original strand, 35501132 - 35501565
Alignment:
| Q |
7 |
aatgatgacaaagagagatgtctgagaaagacgcaaagcatcaagaggaaagatatccatttcaacacattagtcaattcatgtaaacatcactgaccat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35501132 |
aatgatgacaaagagagatgtctgagaaagacgcaaagcatcaagaggaaagatatccatttcaacacattagtcagttcatgtaaacatcactgaccat |
35501231 |
T |
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| Q |
107 |
ttaaatcaacttctccccaattgcgcccgctaacagaaagttgcttctcctttacagttattccaaaggtgttttggaaaaaactggtcaaacttacaac |
206 |
Q |
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| T |
35501232 |
ttaaatcaacttctccccaattgcgcccactaacagaaagttgcttctcctttacagttattccaaaggtgttttggaaaaaactggtcaaacttacaac |
35501331 |
T |
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| Q |
207 |
atcctgcaaaatagaaaatatcaacataagaaatgatatgtgatgccaatctaagtcccagtcattaatatctatatctgtcaaaatgttaatcaaagga |
306 |
Q |
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| T |
35501332 |
atcctgcaaaatagaaaatatcaacataagaaatgatatgtgatgccaatctaagtcccagtcattaatatctatatctgtcaaaatgttagtcaaagga |
35501431 |
T |
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| Q |
307 |
acaaacataagaaaacaaaccagatatttgaattccttagtctacaaatatatgtaattggacattcaggaggggcagaaagtaacctgatcacgaaatc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35501432 |
acaaacataagaaaacaaaccagatatttgaattccttagtctacaaatatatgtaattggacattcaggaggggcagaaagtaacctgatcacgaaatc |
35501531 |
T |
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| Q |
407 |
cagtgaatttgtagaacaacccatctttgatctg |
440 |
Q |
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| T |
35501532 |
cagtgaatttgtagaacaacccatctttgatctg |
35501565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 84 - 219
Target Start/End: Complemental strand, 7070258 - 7070123
Alignment:
| Q |
84 |
ttcatgtaaacatcactgaccatttaaatcaacttctccccaattgcgcccgctaacagaaagttgcttctcctttacagttattccaaaggtgttttgg |
183 |
Q |
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|||||||||| ||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| |||||||||||| |
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| T |
7070258 |
ttcatgtaaagatcaccaaccatttagatcaacttctccccaattgcgcccagtaacagaaagttgcttctccccaacagttactccgaaggtgttttgg |
7070159 |
T |
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| Q |
184 |
aaaaaactggtcaaacttacaacatcctgcaaaata |
219 |
Q |
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| T |
7070158 |
aagaaacttgtcaagcttacaacatcctacaaaata |
7070123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 391 - 440
Target Start/End: Complemental strand, 7069935 - 7069886
Alignment:
| Q |
391 |
acctgatcacgaaatccagtgaatttgtagaacaacccatctttgatctg |
440 |
Q |
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| T |
7069935 |
acctgatcacggaaaccagtgaatttgtagaacaacccatctttgatctg |
7069886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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