View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4406-Insertion-9 (Length: 351)
Name: NF4406-Insertion-9
Description: NF4406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4406-Insertion-9 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 351
Target Start/End: Complemental strand, 44901356 - 44901013
Alignment:
| Q |
8 |
caatgcgcttgtagacgctgcgccattttggtctagcaaagtgagacttgacgggtgttccagtcaagatatccacaccagttttagcatggtttagtga |
107 |
Q |
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| T |
44901356 |
caatgcgcttgtagacgctgcaccattttggtctagcaaagtgagacttgacgggtgttccagtcaagatatccacaccatttttagcatggtttagtga |
44901257 |
T |
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| Q |
108 |
ttgaagcatagcaataagagtagattgagcatcaccgtcttcatatacactagtcaagtgactgtggatctcaattactctcctacggtcttcttccacc |
207 |
Q |
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| T |
44901256 |
ttgaagcatagcaataagagcagattgagcatcaccgtcttcatatacactagtcaagtgactgtggatctcaattactctcctacggtcttcttccacc |
44901157 |
T |
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| Q |
208 |
acctcattcattacatctttaaaccaatcaaagaaaccttgtttcgccgccacccaataaaaataagcctttctagttttgaagttatttaaaccggttt |
307 |
Q |
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| T |
44901156 |
acctcattcattacatctttaaaccaatcaaagaaaccttgtttcgccgccacccaataaaaataagcctttctagttttgaagttatttaaaccggttt |
44901057 |
T |
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| Q |
308 |
tcttgtgttgtgatgatcttggtgatttgccacctgttccctct |
351 |
Q |
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| T |
44901056 |
tcttgcgttgtgatgatcttggtgatttgccacctgttccctct |
44901013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 16 - 350
Target Start/End: Complemental strand, 44892695 - 44892361
Alignment:
| Q |
16 |
ttgtagacgctgcgccattttggtctagcaaagtgagacttgacgggtgttccagtcaagatatccacaccagttttagcatggtttagtgattgaagca |
115 |
Q |
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| T |
44892695 |
ttgtagacactgcgccaattgggtcgtgcaaagtaagacgcgatgggtgttccatttaagatatccaaaccttctttagcatggtttagtgattgaagga |
44892596 |
T |
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| Q |
116 |
tagcaataagagtagattgagcatcaccgtcttcatatacactagtcaagtgactgtggatctcaattactctcctacggtcttcttccaccacctcatt |
215 |
Q |
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| T |
44892595 |
cagtaacaagagcagagcgagcatcaccgtcttcatatacactagtcaagtgactgtgtatctcaattactttcttgtgatcctcttcagccacctcatt |
44892496 |
T |
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| Q |
216 |
cattacatctttaaaccaatcaaagaaaccttgtttcgccgccacccaataaaaataagcctttctagttttgaagttatttaaaccggttttcttgtgt |
315 |
Q |
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| T |
44892495 |
tattacccctttaaaccaatcaaagaaaccttgttcaccagccatccagtaaaaataagcctttctagttttaaagttactcaaatcagttttcttgtgt |
44892396 |
T |
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| Q |
316 |
tgtgatgatcttggtgatttgccacctgttccctc |
350 |
Q |
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| T |
44892395 |
tctgatggtcttgatgatttaccaattgttccctc |
44892361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 8 - 350
Target Start/End: Complemental strand, 44918106 - 44917764
Alignment:
| Q |
8 |
caatgcgcttgtagacgctgcgccattttggtctagcaaagtgagacttgacgggtgttccagtcaagatatccacaccagttttagcatggtttagtga |
107 |
Q |
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| T |
44918106 |
caatgcgcttgtagacactacgccaattaggtttagcaaagtgagacttgacgcgtgttccagagacgatatccacaccatttttagcatgattaagtga |
44918007 |
T |
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| Q |
108 |
ttgaagcatagcaataagagtagattgagcatcaccgtcttcatatacactagtcaagtgactgtggatctcaattactctcctacggtcttcttccacc |
207 |
Q |
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| T |
44918006 |
ttggagcatagcaataagagcagagcgagcatcaccctcttcataaacactagtacaataattgtgtagctcaattactcccctatgatcatcttcagcc |
44917907 |
T |
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| Q |
208 |
acctcattcattacatctttaaaccaatcaaagaaaccttgtttcgccgccacccaataaaaataagcctttctagttttgaagttatttaaaccggttt |
307 |
Q |
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| T |
44917906 |
acctcattcattactcctttaaaccaatcaaatgaaccctgttctctagtaacccagtaaaaataagccctcttagttttaaagctattcaaaccggttc |
44917807 |
T |
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| Q |
308 |
tcttgtgttgtgatgatcttggtgatttgccacctgttccctc |
350 |
Q |
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| T |
44917806 |
tcttgtgttgtgatggtctcggtgatttactacttgttccctc |
44917764 |
T |
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