View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4406_high_1 (Length: 744)
Name: NF4406_high_1
Description: NF4406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4406_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 670; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 17 - 734
Target Start/End: Original strand, 42454223 - 42454940
Alignment:
| Q |
17 |
aaaatatatatgagaaattgacatctcacacatatatgtaagaaattgacatttcccatcgattgtcaatcaaattttgcaccaaataattaagggattt |
116 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42454223 |
aaaatatatatgagaaattgacatcttacacatatatgtaagaaattgacattttccatcgattgtcaatcaaattttgcaccaaataattaagagattt |
42454322 |
T |
|
| Q |
117 |
aaatatctatgactactcacattcctattggtattataggggcataactaagtaccttaacattttaattaccgacataattttattgttctaatcagac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42454323 |
aaatatctatgactactcacattcctattggtattataggggtataactaagtaccttaacattttaattaccgacataattttattgttctaatcagac |
42454422 |
T |
|
| Q |
217 |
aagtatatttttgttagattttttatcaccacaatacatgtatgaaactttaagaccgtgtccctcactccagggcaagtaactgacaaactctggaaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42454423 |
aagtatatttttgttagattttttatcaccacaatacatgtatgaaactttaagaccgtgtccctcactccagggcaagtaactgacaaactctggaaat |
42454522 |
T |
|
| Q |
317 |
ataaatctacgtagtactatactacagagtatgcatatactatgatgtcttgctcatttatgctattttagcattttatgggacacaaattgacggtgat |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
42454523 |
ataaatctacgtagtactatactacagagtatgcatatactatgatgtcttgctcatttatactattttagtattttatgggacacaaattgacggtgat |
42454622 |
T |
|
| Q |
417 |
gataagcatgtgcttggctgtgaataatgcttagggcacggtacacatcatagcttgtaatcataccctcacctcactatatacgtgatgagccttcctt |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42454623 |
gataagcatgtgcttggctgtgaataatgcttagggcacggtacacatcatggcttgtaatcataccctcacctcactatatacgtgatgagccttcctt |
42454722 |
T |
|
| Q |
517 |
ttccatttattttgaacgacgttttagtatatagtttaagagactttgatgttatatttttcttgtccataaaaattagtcacatgaacgaatttccaag |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42454723 |
ttccatttattttgaacgacgttttagtatatagtttaagagactttgatgttatatttttcttgtccataaaaattagtcacatgaacgaatttccaag |
42454822 |
T |
|
| Q |
617 |
taaagtggaagttagattgtgtaagcacttgtagatttattcattttgctaattttgattggttgatggataagttatccacaattcttcaaaagttaat |
716 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
42454823 |
taaagtggaagttagattgtgtaaacacttgtagatttattcatttggctaattttgattggttgatggataagttatctacaattcttcaaaagttagt |
42454922 |
T |
|
| Q |
717 |
atcgacctcatatattct |
734 |
Q |
| |
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|| ||||||||||||||| |
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| T |
42454923 |
atagacctcatatattct |
42454940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 662 - 711
Target Start/End: Complemental strand, 37758993 - 37758944
Alignment:
| Q |
662 |
ttgctaattttgattggttgatggataagttatccacaattcttcaaaag |
711 |
Q |
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||||| ||||| |||||||||||||||| |||| ||| |||||||||||| |
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|
| T |
37758993 |
ttgctcattttcattggttgatggataaattattcaccattcttcaaaag |
37758944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 665 - 709
Target Start/End: Complemental strand, 42249062 - 42249018
Alignment:
| Q |
665 |
ctaattttgattggttgatggataagttatccacaattcttcaaa |
709 |
Q |
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|||||||| |||||||| ||||||| ||||||||||||||||||| |
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| T |
42249062 |
ctaattttaattggttgttggataaattatccacaattcttcaaa |
42249018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 642 - 709
Target Start/End: Complemental strand, 17863470 - 17863403
Alignment:
| Q |
642 |
cacttgtagatttattcattttgctaattttgattggttgatggataagttatccacaattcttcaaa |
709 |
Q |
| |
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|||||||| ||||| |||| | ||||||||| |||| ||| || |||| ||||||||||||||||||| |
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| T |
17863470 |
cacttgtaaatttactcatatagctaattttaattgattgttgaataaattatccacaattcttcaaa |
17863403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 588 - 709
Target Start/End: Original strand, 3708782 - 3708901
Alignment:
| Q |
588 |
aaaattagtcacatgaacgaatttccaagtaaagtggaagttagattgtgtaagcacttgtagatttattcattttgctaattttgattggttgatggat |
687 |
Q |
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|||||||||||||| | | ||||| || |||||||||| |||| |||| || |||||| | ||||| |||||| ||||||||||||| ||||| ||| |
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| T |
3708782 |
aaaattagtcacataagcaaatttataaataaagtggaaattagtttgtagaaccacttgcatatttactcatttagctaattttgattaattgatagat |
3708881 |
T |
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| Q |
688 |
aagttatccacaattcttcaaa |
709 |
Q |
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| T |
3708882 |
ca--aatccacaattcttcaaa |
3708901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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