View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4406_high_8 (Length: 240)

Name: NF4406_high_8

Description: NF4406

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF4406_high_8

[»] chr7 (2 HSPs)

Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 149; E-Value: 8e-79

Query Start/End: Original strand, 20 - 180

Target Start/End: Original strand, 39032378 - 39032538

Alignment:

Q	20	cctattacactgttttgctctgtgtgattatatttaaataggggtgcgcatgagccaactcaacctgaagacccgtcccaactcaatagtttcgggtatg	119	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39032378	cctattacactgttttgctttgtgtgattatattcaaataggggtgcgcatgagccaactcaacatgaagacccgtcccaactcaatagtttcgggtatg	39032477	T

Q	120	gtgcatgttccagaaatctaggaaatgggggctgaaaaaattattgaaaggaaagattttg	180	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39032478	gtgcatgttccagaaatctaggaaatgggggctgaaaaaattattgaaaggaaagattttg	39032538	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2

Raw Score: 43; E-Value: 0.000000000000001

Query Start/End: Original strand, 190 - 240

Target Start/End: Original strand, 39032559 - 39032609

Alignment:

Q	190	atttagatatgaaaatttgcctgaatttgtgtagtcattgcaaaatcgttg	240	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39032559	atttagatatgaatatttgcctgaatttttgtagtcattgcaaaatcgttg	39032609	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]