View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4406_low_10 (Length: 236)
Name: NF4406_low_10
Description: NF4406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4406_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 1885075 - 1885303
Alignment:
| Q |
1 |
ctgcttgagcattttcttgtacaagaagtgactgaaaattctagtccgaaaagacagtcattttctgagaaacatatgggattgggatgtaaccttaatg |
100 |
Q |
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| T |
1885075 |
ctgcttgagcattttcttgtacaagaagtgactgaaaattctagtccgaaaagacagtcattttctgagaaacatatgggattgggatgtaaccttaatg |
1885174 |
T |
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| Q |
101 |
ctaaagcaagagtagcaagacttgttgacagttatcttacagaggtttcaagagatagaaacctttcattgacaaagtttcaggtacttgctgaagcttt |
200 |
Q |
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| T |
1885175 |
ctaaagcaagagtagcaagacttgttgacagttatcttacagaggtttcaagagatagaaacctttcattgacaaagtttcaggtacttgctgaagcttt |
1885274 |
T |
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| Q |
201 |
gcctgaatcagctagaacctgtgatgatg |
229 |
Q |
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| T |
1885275 |
gcctgaatcagctagaacctgtgatgatg |
1885303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 37214003 - 37213870
Alignment:
| Q |
83 |
tgggatgtaaccttaatgctaaagcaagagtagcaagacttgttgacagttatcttacagaggtttcaagagatagaaacctttcattgacaaagtttca |
182 |
Q |
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| T |
37214003 |
tgggaagtaacctgaatgccaaggcaagagtggcaaggcttgtggacagttatcttacagaggtatctagagatagaaacctttcatcgacaaagtttca |
37213904 |
T |
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| Q |
183 |
ggtacttgctgaagctttgcctgaatcagctaga |
216 |
Q |
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| T |
37213903 |
ggttcttgcagaagctttacctgagtcagctaga |
37213870 |
T |
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