View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4406_low_2 (Length: 533)
Name: NF4406_low_2
Description: NF4406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4406_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 505; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Complemental strand, 41658257 - 41657741
Alignment:
| Q |
1 |
tattgtgaatttgttcttctttgtaacagacctgctcaatacgttgtcttagttgcgtgaagctttctctcaaaaatgctcggaaggtgccaccaattgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41658257 |
tattgtgaatttgttcttctttgtaacagacctgctcaatacgttgtcttagttgcgtgaagctttctctcaaaaatgctcggaaggtgccaccaattgt |
41658158 |
T |
|
| Q |
101 |
gacgaagtttggaataacattgaatgcaccacctccttgaatatttcctacagtcacaacctgtgaggatattatgttgggaaggcattcagacctcagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41658157 |
gacgaagtttggaataacattgaatgcaccacctccttgaatatttcctacagtcacaacctgtgaggatattatgttgggaaggcattcagacctcagg |
41658058 |
T |
|
| Q |
201 |
ttttcgtcatattcaaaaatcgttgtaaataaacaatgttgcactatggtttccaaaaatttttcctcaaacaatgatgagttgcaagtttttacctggg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41658057 |
ttttcgtcatattcaaaaatcgttgtaaataaacaatgttgcactatggtttccaacattttttcctcaaacaatgatgagttgcaagtttttacctggg |
41657958 |
T |
|
| Q |
301 |
tgtcaaggggatcagcctcgcgagaaacgatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttgaggattggctgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41657957 |
tgtcaaggggatcagcctcgcgagaaacgatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttgaggattggctgc |
41657858 |
T |
|
| Q |
401 |
atggcctcccttgcctcttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacctaaaggtatgttaggtccg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41657857 |
atggcctcccttgcctcttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacctaaaggtatgttaggtccg |
41657758 |
T |
|
| Q |
501 |
acatgcaatccaaatat |
517 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
41657757 |
atatgcaatccaaatat |
41657741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 2 - 517
Target Start/End: Original strand, 43211171 - 43211687
Alignment:
| Q |
2 |
attgtgaatttgttcttctttgtaacagacctgctcaatacgttgtcttagttgcgtgaagctttctctcaaaaatgctcggaaggtgccaccaattgtg |
101 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43211171 |
attgtgaatttggtcttctttgtaacagacctgctcaatacggtgtcttagttgcgtgaggctttctctcaaaaatgctcggaaggtgccaccaattgtg |
43211270 |
T |
|
| Q |
102 |
acgaagtttggaataacattgaatgcaccacctccttgaatatttcctacagtcacaacctgtgaggatattatgttgggaaggcattcagacctcaggt |
201 |
Q |
| |
|
||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| || | || |
|
|
| T |
43211271 |
acggagtctggaataacattgactgcaccacctccttgaatatttcctacagtcacaacctgtgaggatattaggttaggaagacattcagatcttatgt |
43211370 |
T |
|
| Q |
202 |
tttcgtcatattcaaaaatcgttgtaaataaacaatgttgcactatggtttccaaaaatttt-tcctcaaacaatgatgagttgcaagtttttacctggg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43211371 |
tttcgtcatattcaaaaatcgttgtaaataaacaatgttgcactacggtttccaacatttttttcctcaaacaatgatgagttgcaaatttttacctggg |
43211470 |
T |
|
| Q |
301 |
tgtcaaggggatcagcctcgcgagaaacgatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttgaggattggctgc |
400 |
Q |
| |
|
| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43211471 |
tttcaaggggatcagcctcgcgtgaaacaatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttgaggattggctgc |
43211570 |
T |
|
| Q |
401 |
atggcctcccttgcctcttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacctaaaggtatgttaggtccg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43211571 |
atggcctcccttgcctcttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacctaaaggtatgttaggtccg |
43211670 |
T |
|
| Q |
501 |
acatgcaatccaaatat |
517 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
43211671 |
acatgcaatccaaatat |
43211687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 21 - 517
Target Start/End: Complemental strand, 41652229 - 41651729
Alignment:
| Q |
21 |
ttgtaacagacctgctcaatacgttgtcttagttgcgtgaagctttctctcaaaaatgctcggaaggtgccaccaattgtgacgaagtttggaataacat |
120 |
Q |
| |
|
|||| |||||||||||||||||| ||||| || ||||||||||||||||| ||| |||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
41652229 |
ttgtgacagacctgctcaatacggtgtctcagatgcgtgaagctttctcttggaaaagctcggaaggtgccaccaattgtgacagagtctggaataacat |
41652130 |
T |
|
| Q |
121 |
tgaatgcaccacctccttgaatatttcctacagtcacaacctgtgaggatatta--tgttgggaaggcattcagacctcaggttttcgtcatattcaaaa |
218 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||| |||||||||| |||| |||||||||| || |||||||||||||||||||| |||| |
|
|
| T |
41652129 |
tgaatgcaccacctccttgaaactttcctactgtcacaacctgcgaggatattatttgttaggaaggcatttaggcctcaggttttcgtcatattaaaaa |
41652030 |
T |
|
| Q |
219 |
atcgttgtaaataaacaatgttgcact--atg---gtttccaaaaatttttcctcaaacaatgatgagttgcaagtttttacctgggtgtcaaggggatc |
313 |
Q |
| |
|
||| ||||||| ||| ||||| || | ||| | || || ||| | |||||||| |||||||| || ||||||||||| ||| | |||||| |
|
|
| T |
41652029 |
atcattgtaaacaaataatgtggcggtaaatgacagaatcaaacaatggt---gcaaacaatcatgagttgtaaacttttacctgggagtctacgggatc |
41651933 |
T |
|
| Q |
314 |
agcctcgcgagaaacgatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttgaggattggctgcatggcctcccttg |
413 |
Q |
| |
|
| ||||||||||||| || |||||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||| ||||| |||| || ||| || |
|
|
| T |
41651932 |
aacctcgcgagaaacaatttgttgtaagctaacaactacattggaagccgccaaaatggggtcgatagcatggtgaggaatggctccatgaccccccatg |
41651833 |
T |
|
| Q |
414 |
cctcttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacctaaaggtatgttaggtccgacatgcaatccaa |
513 |
Q |
| |
|
|| ||||||||||||| |||||| || | ||||||| |||||||| |||||||| ||||||||||||||||||| |||| | |||||||||||||| |
|
|
| T |
41651832 |
ccgcttattactgcttcaaagaaaccgcttcctgcagcaataggaccagacctagaagccacttcacctaaaggtaagttatttaggacatgcaatccaa |
41651733 |
T |
|
| Q |
514 |
atat |
517 |
Q |
| |
|
|||| |
|
|
| T |
41651732 |
atat |
41651729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 43225826 - 43226046
Alignment:
| Q |
23 |
gtaacagacctgctcaatacgttgtcttagttgcgtgaagctttctctcaaaaatgctcggaaggtgccaccaattgtgacgaagtttggaataacattg |
122 |
Q |
| |
|
||||||||||||||||||||| ||||| || |||||||||||||||||| |||| ||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
43225826 |
gtaacagacctgctcaatacggtgtctcagatgcgtgaagctttctctcgaaaaagctcggaaggtgccaccaattgtgacggagtctggaataacattg |
43225925 |
T |
|
| Q |
123 |
aatgcaccacctccttgaatatttcctacagtcacaacctgtgaggata----ttatgttgggaaggcattcagacctcaggttttcgtcatattcaaaa |
218 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||| ||| ||||||| | |||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
43225926 |
aatgcaccacctccttgaaactttcctacagtcacaacctatgagtatattatttatgttagaaaggcatttagacctcaggttttcatcatattcaaaa |
43226025 |
T |
|
| Q |
219 |
atcgttgtaaataaacaatgt |
239 |
Q |
| |
|
||| ||||||| ||| ||||| |
|
|
| T |
43226026 |
atcattgtaaacaaataatgt |
43226046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 268 - 517
Target Start/End: Original strand, 43226123 - 43226372
Alignment:
| Q |
268 |
caaacaatgatgagttgcaagtttttacctgggtgtcaaggggatcagcctcgcgagaaacgatatgttgtaagctaacaatcacattcgaagccgccaa |
367 |
Q |
| |
|
|||||||| |||||||| ||| ||||||||||| ||| | ||||||| |||||||||||||||| |||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
43226123 |
caaacaatcatgagttgtaagcttttacctgggagtctacgggatcaacctcgcgagaaacgatttgttgtaagctaacaactacattggaagcagccaa |
43226222 |
T |
|
| Q |
368 |
aatggggtcaatagcatgttgaggattggctgcatggcctcccttgcctcttattactgctttaaagaagccacctcctgcaagcataggacctgaccta |
467 |
Q |
| |
|
||||||||| |||||||| |||||| ||||| |||| || ||| |||| ||||||||||||| |||||| |||| ||||||| ||||||||| ||||| |
|
|
| T |
43226223 |
aatggggtcgatagcatggtgaggaatggctccatgaccccccatgccgcttattactgcttcaaagaaaccacatcctgcagccataggaccagacctc |
43226322 |
T |
|
| Q |
468 |
gatgccacttcacctaaaggtatgttaggtccgacatgcaatccaaatat |
517 |
Q |
| |
|
|||||||||||||||||||||| |||| | |||||||||||||||||| |
|
|
| T |
43226323 |
gatgccacttcacctaaaggtaagttacttaggacatgcaatccaaatat |
43226372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 291 - 517
Target Start/End: Original strand, 43204438 - 43204664
Alignment:
| Q |
291 |
tttacctgggtgtcaaggggatcagcctcgcgagaaacgatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttgag |
390 |
Q |
| |
|
|||||||| | ||| ||||||||| |||||||||||| || ||||||||||||||||||||||| |||| ||||| || ||||| |||| |||||||| |
|
|
| T |
43204438 |
tttacctgagagtcgaggggatcaatctcgcgagaaacaatttgttgtaagctaacaatcacattggaagttgccaatatagggtctatagaatgttgag |
43204537 |
T |
|
| Q |
391 |
gattggctgcatggcctcccttgcctcttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacctaaaggtat |
490 |
Q |
| |
|
|| ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||||| ||||| |
|
|
| T |
43204538 |
gaatggctgcatggcctcccctgccgcttattactgctttaaagaagccatttcctgcaaatataggaccggacctagaagccacttcacctagaggtaa |
43204637 |
T |
|
| Q |
491 |
gttaggtccgacatgcaatccaaatat |
517 |
Q |
| |
|
|||| | |||||||||||||||||| |
|
|
| T |
43204638 |
gttatttaggacatgcaatccaaatat |
43204664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 43203888 - 43204049
Alignment:
| Q |
14 |
ttcttctttgtaacagacctgctcaatacgttgtcttagttgcgtgaagctttctctcaaaaatgctcggaaggtgccaccaattgtgacgaagtttgga |
113 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||||| ||||| ||||||||||| | |||| |||||||| ||||||||||||||||| ||| |||| |
|
|
| T |
43203888 |
ttcttcttcataacagacctgctcaatgcggtgtctcagttgtgtgaagctttcgtttgaaaaagctcggaaagtgccaccaattgtgacagagtctgga |
43203987 |
T |
|
| Q |
114 |
ataacattgaatgcaccacctccttgaatatttcctacagtcacaacctgtgaggatattat |
175 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||| ||||| |||||||||||| |
|
|
| T |
43203988 |
ataacattgaatgcaccacctccttgaatcattgctacagtcaaaacctatgaggatattat |
43204049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 268 - 487
Target Start/End: Original strand, 25928362 - 25928589
Alignment:
| Q |
268 |
caaacaatgatgagttgcaagtttttacctgggtgtcaaggggatcagcctcgcgagaaacgatatgttgtaagctaacaatcacattcgaagccgccaa |
367 |
Q |
| |
|
|||||| | |||||||| ||| |||||| |||| ||| | ||||||| ||||||||||||| || ||||||||||||| | | ||||| ||||||||||| |
|
|
| T |
25928362 |
caaacattcatgagttgtaagcttttacttgggagtctatgggatcaacctcgcgagaaactatttgttgtaagctaatagttacattggaagccgccaa |
25928461 |
T |
|
| Q |
368 |
aatggggtcaatagcatgttgaggattggctgcatggcctcc--------cttgcctcttattactgctttaaagaagccacctcctgcaagcataggac |
459 |
Q |
| |
|
|||||||| | | |||| |||||| ||||| |||| || || | |||| ||||||||||||| |||||| |||| ||||||||| ||||||| |
|
|
| T |
25928462 |
aatggggttgagaacatggtgaggaatggctccatgccccccccccaccacatgccgcttattactgcttcaaagaaaccacttcctgcaagaataggac |
25928561 |
T |
|
| Q |
460 |
ctgacctagatgccacttcacctaaagg |
487 |
Q |
| |
|
| |||||| |||| | ||||||||||| |
|
|
| T |
25928562 |
cagacctaaatgcaatgtcacctaaagg |
25928589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 5070461 - 5070594
Alignment:
| Q |
30 |
acctgctcaatacgttgtcttagttgcgtgaagctttctctcaaaaatgctcggaaggtgccaccaattgtgacgaagtttggaataacattgaatgcac |
129 |
Q |
| |
|
|||| |||||| || ||||| ||||| ||||||||||| | |||| ||||||||||| |||||||||||||| | |||||||||||||||||||| |
|
|
| T |
5070461 |
acctcctcaatccgctgtctcagttggttgaagctttctttagaaaaggctcggaaggtaccaccaattgtgacatgatctggaataacattgaatgcac |
5070560 |
T |
|
| Q |
130 |
cacctccttgaatatttcctacagtcacaacctg |
163 |
Q |
| |
|
||||||||| || ||| | | ||||||||||| |
|
|
| T |
5070561 |
tacctccttggatctttgcaatcgtcacaacctg |
5070594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 481
Target Start/End: Original strand, 5071208 - 5071398
Alignment:
| Q |
291 |
tttacctgggtgtcaaggggatcagcctcgcgagaaacgatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttgag |
390 |
Q |
| |
|
|||||||||| ||| | |||||||||||||||||||| | || |||| ||||| |||| || ||||| || || ||||| || |||| ||||||| |
|
|
| T |
5071208 |
tttacctgggagtctaaaggatcagcctcgcgagaaacaaggtgctgtaggctaataatcgcaccagaagctgctaatatgggatctatagattgttgag |
5071307 |
T |
|
| Q |
391 |
gattggctgcatggcctcccttgcctcttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacc |
481 |
Q |
| |
|
|| | |||||||| |||||||| || |||||| ||||| |||||| |||| |||||| | || ||||| ||||| || | ||||||||| |
|
|
| T |
5071308 |
gaatagctgcatgacctccctttccacttatttttgcttcaaagaatccacttcctgccaatattggaccagacctggaggacacttcacc |
5071398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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