View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4406_low_3 (Length: 513)
Name: NF4406_low_3
Description: NF4406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4406_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 11 - 495
Target Start/End: Original strand, 39781744 - 39782247
Alignment:
| Q |
11 |
gaacctgtgaaaatcaaattcatgtggaaaagaagtgaacatagctgacgggactactctgaacgagaaaacttatgtatatccggtatccaaaaacaaa |
110 |
Q |
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| T |
39781744 |
gaacttgtgaaaatcaaattcacgtggagaagaagtgaacatagctgacgggactactctgaacgagaaaacttatggatatccggtatccaaaaacaaa |
39781843 |
T |
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| Q |
111 |
aattagaaataagaaatgatacaaggaaattagaaaagaaggtttttacataaatacttgtatagcaagaaatagaaaaaataattcattagattgtaca |
210 |
Q |
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| T |
39781844 |
aaatagaaataagaaatgatacaaggaaattagaaaagaaggtttttacataaatacttgcatagcaagaaatagaaaaaataattcattagattgtacg |
39781943 |
T |
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| Q |
211 |
aaaagtagtagcgttgtcaacaaaaaataatgggaaaatctcattttttatgattttgactgaacaactatatcgtaagaaaaatggtttgtaccgaaac |
310 |
Q |
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| T |
39781944 |
aaaagtagtagcgttgtcaacaaaaaataatgggaaaatctcattttttatgattttgactgaacaactatatcgtaagaaaaatggtttgtaccgaaac |
39782043 |
T |
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| Q |
311 |
agaacccacaattaccacggttaagtataactaaacttgtaagaccatgtttttattgcactattacagatgttggaacatttcaaccatgaaatgcgcc |
410 |
Q |
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| T |
39782044 |
agaacccacaattaccacggttaagtataactaaacttgtaagaccatgtttttattgcactattacagatgttggaacatttcaaccgtgaaatgcgcc |
39782143 |
T |
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| Q |
411 |
----tgggcggcaaaactgcatccggtcacttttatgcttcatttgggt--------------acaaaa-gatttggcttcaattgtccatctggcttat |
491 |
Q |
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| T |
39782144 |
ggcctgggcggcaaaactgcatccggtcacttttatgcttcatttgggttacatttccaaggtacaaaaagatttggcttcaattgtccatctggcttat |
39782243 |
T |
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| Q |
492 |
gatg |
495 |
Q |
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| T |
39782244 |
gatg |
39782247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 313 - 455
Target Start/End: Original strand, 39793525 - 39793668
Alignment:
| Q |
313 |
aacccacaattaccacggttaagtataactaa-acttgtaagaccatgtttttattgcactattacagatgttggaacatttcaaccatgaaatgcgcct |
411 |
Q |
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| T |
39793525 |
aacctacaattaccgccgctaagtataattaacacttttaagatcatgtctttaatgtgttgtttcagatgttacaacatttcaaccatgaaatgcgcct |
39793624 |
T |
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| Q |
412 |
gggcggcaaaactgcatccggtcacttttatgcttcatttgggt |
455 |
Q |
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| T |
39793625 |
ggatggaaaaactgcatccggtcacttttgtgcttcatttgggt |
39793668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 454
Target Start/End: Original strand, 39788572 - 39788649
Alignment:
| Q |
377 |
cagatgttggaacatttcaaccatgaaatgcgcctgggcggcaaaactgcatccggtcacttttatgcttcatttggg |
454 |
Q |
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| T |
39788572 |
cagatgttacaacatttcaaccgtgaaatgcgcctgtctggcaaaattgcatccggtcacttttgtgcttcatttggg |
39788649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 150
Target Start/End: Original strand, 39788318 - 39788411
Alignment:
| Q |
57 |
gacgggactactctgaacgagaaaacttatgtatatccggtatccaaaaacaaaaattagaaataagaaatgatacaaggaaattagaaaagaa |
150 |
Q |
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| T |
39788318 |
gacgagactactctgaatgagaaaacttatggatttcttatatccaaagaaaaagaatagaatcaagagatgatataaggaaattagaatagaa |
39788411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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