View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4406_low_4 (Length: 508)
Name: NF4406_low_4
Description: NF4406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4406_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 43 - 490
Target Start/End: Complemental strand, 5680449 - 5679998
Alignment:
| Q |
43 |
gtattatttagacacacaaaaattgatataatatattgacatcgttgtaaatacaactttaatcgatgttggtgtcggaaccaatgagnnnnnnnnn--c |
140 |
Q |
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|||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
5680449 |
gtattatttagacatataaaaattgatataatatattgacgtcgttgtaaatacaactttaatcaatgttggtgtcggaaccaatgagaaaaaaaaaaac |
5680350 |
T |
|
| Q |
141 |
aatataaaagttggaactaaagtttgtttttaaagaactttcgaaaacgaattttgtgataaatctttttattttgactactagagtaannnnnnnnagg |
240 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||| | ||||||| |||||| ||||||||||||||||||||||||| ||| |
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| T |
5680349 |
aatagaaaagttggaactaaagtgtgtttttaaagaactttcgaaa-caaattttgagataaaactttttattttgactactagagtaattttttttagg |
5680251 |
T |
|
| Q |
241 |
ggactactagagtaattttagcatgtttgactatgtgtgtgacattatttttattttcttattttactactagagtaattttagaatgtttaccaacatt |
340 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5680250 |
ggactactagtgtaattttagcatgtttgcctatgtgtgtgacattatttttattttcttattttactactagagtaattttagaatgtttaccaacatt |
5680151 |
T |
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| Q |
341 |
tgtgacattannnnnnnnnc---cttatttgatggaatgtgtgactttatcttcaccgtacgatatattggcagacctaaatctagtgattttgtggcct |
437 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5680150 |
tgtgacattatttttttttcttccttatttgatggaatgtgtgactttatcttcaccgtacgatatattggcagacctaaatctagtgattttgtggcct |
5680051 |
T |
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| Q |
438 |
tgttgttgagccagtccagatttctgtgtgggtagattttttatgtcccacca |
490 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5680050 |
tgttgttgagccagtccagatttctgtgtgggtagattttttatgtcccacca |
5679998 |
T |
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