View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4406_low_6 (Length: 375)
Name: NF4406_low_6
Description: NF4406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4406_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 357
Target Start/End: Complemental strand, 26608341 - 26607994
Alignment:
| Q |
11 |
cacagacacaaagagaaaggtaagaggcagaatgagtcattatctaaattgttgccagcgttagggacgaggagacagctataaggaccttatggnnnnn |
110 |
Q |
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| T |
26608341 |
cacacacacaaagagaaaggtaagaggcagaatgagtcattatctaaattgttgccagcgttagggacgaggagacagctataagaaccttatggttttt |
26608242 |
T |
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| Q |
111 |
nnnaatgttaataaaaaaccctacaaaataagagagtccgtgaactggcatagtcctctccacgtggggtcctgaaaaactatgagctggatttccatct |
210 |
Q |
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| T |
26608241 |
tttaatgttaataaaaaaccctacaaaataagagagtccgtgaactggcatagtcctctccacgtggggtcctgaaaaactatgagctggatttccatct |
26608142 |
T |
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| Q |
211 |
acttgcttttatactcttattactatagaaga-ttttatttttcaaacaaatatagacattatagaatcatcaccaccaacctggcttaatttcatcaac |
309 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26608141 |
acttgcttttatactcttattactatagaagatttttatttttcaaacaaatatagacattatagaatcatcaccaccaacctggcttaatttcatcaac |
26608042 |
T |
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| Q |
310 |
taatttcaaccaatcacttgtcatttaaagctttcgtatagtagcttt |
357 |
Q |
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|||||||||||||||| |||| ||||||| |||| |||||||| |||| |
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| T |
26608041 |
taatttcaaccaatcagttgttatttaaaactttagtatagtatcttt |
26607994 |
T |
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