View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4406_low_8 (Length: 240)
Name: NF4406_low_8
Description: NF4406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4406_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 4078268 - 4078054
Alignment:
| Q |
19 |
ccttcacattccctcagtttgggaggaattccaagaacttgagatacaaatgatgcaaagtccatatcctccctagttttttgcagtcgaacaaggcata |
118 |
Q |
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| T |
4078268 |
ccttcacattccctcagtttgggaggaattccaagaacttgagatacaaatgatgcaaagtccatatcctccctagttttttggagtcgaacaaggcata |
4078169 |
T |
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| Q |
119 |
aatttcatctattatccaatcaatctcacccttgttatgttccaccctcacttgtgtgaatatattctatgtgtcaaccattcctaaatcttcttctcca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4078168 |
aatttcatctattatccaatcaatctcacccttgttatgtgccaccctcacttgtgtgaatatattctatgtgtcaaccattcctaaatcttcttctcca |
4078069 |
T |
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| Q |
219 |
ctaatcatctctgct |
233 |
Q |
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||||||||| ||||| |
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| T |
4078068 |
ctaatcatcactgct |
4078054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 4101023 - 4100846
Alignment:
| Q |
19 |
ccttcacattccctcagtttgggaggaattccaagaacttgagatacaaatgatgcaaagtccatatcctccctagttttttgcagtcgaacaaggcata |
118 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4101023 |
ccttcacattccctcagtttaggaggaattccaagaacttgagatacaaatgatgcaaagtccatatcctccctagttttttgcagttgaacaaggcata |
4100924 |
T |
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| Q |
119 |
aatttcatctattatccaatcaatctcacccttgttatgttccaccctcacttgtgtgaatatattctatgtgtcaac |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
4100923 |
aatttcatctattatccaatcaatctcacccttgttatgtgccaccctcacttgtgtgaatatattctacgtgtcaac |
4100846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 4502620 - 4502677
Alignment:
| Q |
36 |
tttgggaggaattccaagaacttgagatacaaatgatgcaaagtccatatcctcccta |
93 |
Q |
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|||||||||||||||| |||||| || ||||| |||||| ||||||||||||||||| |
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| T |
4502620 |
tttgggaggaattccatgaactttaggtacaactgatgcggagtccatatcctcccta |
4502677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 19568774 - 19568715
Alignment:
| Q |
27 |
ttccctcagtttgggaggaattccaagaacttgagatacaaatgatgcaaagtccatatc |
86 |
Q |
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|||| ||| |||| ||||||||||| |||||||||||||| ||||| || |||||||||| |
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| T |
19568774 |
ttccttcactttgagaggaattccatgaacttgagatacagatgatacatagtccatatc |
19568715 |
T |
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