View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4407-Insertion-5 (Length: 493)
Name: NF4407-Insertion-5
Description: NF4407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4407-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 9 - 487
Target Start/End: Complemental strand, 40395537 - 40395059
Alignment:
| Q |
9 |
caaatacttggattctgttgttgctatttcttgaaaacaagttggtaattccttttgtgtaaagatttccatcttgggaaatgtatcttccatatagatc |
108 |
Q |
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| T |
40395537 |
caaatacttggattctgttgttgctatttcttgaaaacaagttggtaattccttttgtgtaaagatttccatcttgggaaatgtatcttccatatagatc |
40395438 |
T |
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| Q |
109 |
ctttagacagtgaatatgagatnnnnnnncactgacagattgaaatgattcaaatgtcactacaccaaacaaatttccttaaggctataagacacacctc |
208 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40395437 |
ctttagacagtgaatatgagataaaaaaacactgacagattgaaatgattcaaatgtcactacaccaaacaaatttccttaaggctataagacacacctc |
40395338 |
T |
|
| Q |
209 |
atattgacatttgacaggtatctgttatggcttattataatagtaaaggaacctactttctgtttcattttgaannnnnnnnatggtttaatcaggttta |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40395337 |
atattgacatttgacaggtatctgttatggcttattataatagtaaaggaacctactttctgtttcattttgaattttttttatggtttaatcaggttta |
40395238 |
T |
|
| Q |
309 |
tttctttataaaaatttcattttctcccaaaaatttatatgcttgcattgtaattcacacttttctttaacagccaattggaatctgacagctcatgcnn |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40395237 |
tttctttataaaaatttcattttctcccaaaaatttatatgcttgcattgtaattcacacttttctttaacagccaattggaatctgacagctcatgctt |
40395138 |
T |
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| Q |
409 |
nnnnnnngggtcagctgtcttacaaagtactacataataacatagataattaggcactttttggataaacaacttaatt |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40395137 |
tttttttgggtcagctgtcttacaaagtactacataataacatagataattaggcactttttggataaacaacttaatt |
40395059 |
T |
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