View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4408-Insertion-1 (Length: 1120)
Name: NF4408-Insertion-1
Description: NF4408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4408-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 801; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 801; E-Value: 0
Query Start/End: Original strand, 8 - 908
Target Start/End: Original strand, 7939823 - 7940722
Alignment:
| Q |
8 |
tgttcctcccggtacaaaacctaaaacttgtaagcgatgtaaagggtcaggaaaggtcagtatcatgctggaattgatttaattcctgttacatgcttga |
107 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7939823 |
tgttcctcccggtacaaaacctgaaacttgtaagcgatgtaaagggtcaggaaaggtcagtatcatgctggaattgatttaattcctgttacatgcttga |
7939922 |
T |
|
| Q |
108 |
gaagtgttgttcaattgataattttcaagatttccaggtaattatacaaactgtgataggcggagtgaagattccttgtattaactgcaagggaaccgga |
207 |
Q |
| |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7939923 |
gaagtgttgttcaattgataattttcgagaattccaggtaattatacaaactgtgataggcggagtgaagattccttgtattaactgcaagggaaccgga |
7940022 |
T |
|
| Q |
208 |
gtaattgcatcggtatggtacaaactgtcttctgcactttgcaatatcgactctcttctatttaatatgttagttacaagggttcagaacttcaaatgtg |
307 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
7940023 |
gtaattgcaacggtatggtacaaactgtcttctgcactttgcaatatcgattctcttctatttaatatgttagttataagggttcagaacttcaaatatg |
7940122 |
T |
|
| Q |
308 |
ataaacgaaacgaactccctgtgtctatgtaacctgcttattgcagtctgccgttattagtttggtctacccttaatttttctaaataaaatcatatacc |
407 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || | |
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| T |
7940123 |
ataaacgaaacgaacttcctgtgtctatgtaacctgcttattgcagtctgccgttattagtttggtct-cccttaatttttctaaataaaatcatgtatc |
7940221 |
T |
|
| Q |
408 |
aggcaataaatgacactatagtcattacctgtatttctatggacatggtgttctttcatactaatatcaaattttgggaatatgttgttgatttttaatc |
507 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||| ||||| ||||||||| |||||| ||||||||| |
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|
| T |
7940222 |
aggcaataaatgacactatagtcattacctgtatttctatgtacatggtggtctttcataataatatgaaattgtgggaatatattgttggtttttaatc |
7940321 |
T |
|
| Q |
508 |
ttttgtaattggtatcaggatttctgtaggccttgcaagggtaggaaagttgtcaaaggaacaaagtcaatcaagttggatattatacctggtaattatt |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
7940322 |
ttttgtaattggtatcaggatttctgtaggccttgcaagggtaggaaagttgtcaaaggaacaaagtcagtcaagttggatattatacctggtaattatt |
7940421 |
T |
|
| Q |
608 |
atttttcaatctttttggaatgcagtgttggaatttgttatgtaggccatgttatatggcatacaaagagaaaaatgttacatgaatgagaaatttccat |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7940422 |
atttttcaatctttttggaatgcagtgttggaatttgttaagtaggccatgttatatggcatacaaagagaaaaatgttacatgaatgagaaatttccat |
7940521 |
T |
|
| Q |
708 |
gttgatttctcttaaggtttcactctgaaaatgttttcttatgtatgattttttccatttgcaggcaaagacaacaatgagaccctaaaggtggatggaa |
807 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7940522 |
gttgatttctcttaaggttgcactctaaaaatgttttcttatgtatgattttttccatttgcaggcaaagacaacaatgagaccctaaaggtggatggaa |
7940621 |
T |
|
| Q |
808 |
gcggtggagcagatcctgatggagatcatcctggtgatctatatgttactatcaaggtacttcactagcttagaagtgactgccagttttattatttctt |
907 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
7940622 |
gcggtggagcagatcctgatggagatcatcctggtgatctatatgttactgtcaaggtacttcactagcttagaagtcactgccagttttattatttctt |
7940721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 749 - 1052
Target Start/End: Original strand, 7928128 - 7928441
Alignment:
| Q |
749 |
tgtatgattttttccatttgcaggcaaagacaacaatgagaccctaaaggtggatggaagcggtggagcagatcctgatggagatcatcctggtgatcta |
848 |
Q |
| |
|
|||||||| |||| ||||||||| | ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||| || | | ||||||||| |
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|
| T |
7928128 |
tgtatgatatttttgatttgcagggatagacaacaatgagaccctaaaggtgtatggaggtggtggagcagatcctgatggaagtcgttccggtgatcta |
7928227 |
T |
|
| Q |
849 |
tatgttactatcaaggtacttcactagcttagaagtgactgccagttttattatttct----ttgtattttaaagccaagtcaattatatttctttcatc |
944 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| || | |||||| |||||||||| | ||||||||||||| |||||||||| |||| ||||| || |
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|
| T |
7928228 |
tatgctactatcaaggtacttcagtagcttaaaaattactgccttttttattattctttatattgtattttaaag-caagtcaattgtattcctttcctc |
7928326 |
T |
|
| Q |
945 |
tatgctttttgcaggttagggaagatcctgttttt-gcagaga--gattagatgttcatgt-gatgctgttt--agtttcactca-gtactgtttcttga |
1037 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||| ||||||| |||| |||||||| || |||||||||| ||||||||||| ||| |||||| ||| |
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| T |
7928327 |
tatactttttacaggttagggaagatcctgtttttcgcagagaaggattggatgttcacgtggatgctgttttaagtttcactcaggtaatgtttcatga |
7928426 |
T |
|
| Q |
1038 |
agaaaatattgagca |
1052 |
Q |
| |
|
||||||| ||||||| |
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|
| T |
7928427 |
agaaaatgttgagca |
7928441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 10 - 268
Target Start/End: Original strand, 7927206 - 7927464
Alignment:
| Q |
10 |
ttcctcccggtacaaaacctaaaacttgtaagcgatgtaaagggtcaggaaaggtcagtatcatgctggaattgatttaattcctgttacatgcttgaga |
109 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||| |||||||||||| |||||||||| || ||||||| ||||||||| ||||||| || ||||| |
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| T |
7927206 |
ttcctcctggtacaaaacctgaaacttgtaagcgatgcaaagggtcaggagtggtcagtatcgtgttggaattaatttaattcttgttacaagcctgaga |
7927305 |
T |
|
| Q |
110 |
agtgttgttcaattgataattttcaagatttccaggtaattatacaaactgtgataggcggagtgaagattccttgtattaactgcaagggaaccggagt |
209 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| | || ||||||||| ||| | || || | | | ||||| || ||||||||||| ||| |
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|
| T |
7927306 |
agtgttgttcaattgataatttttgagatgtccagatgtttgtacaaactggaatattcagaatggaaagtacttgtgctacatgcaagggaactggaaa |
7927405 |
T |
|
| Q |
210 |
aattgcatcggtatggtacaaactgtcttctgcactttgcaatatcgactctcttctat |
268 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| ||| ||| |||| || |||||||||| |
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|
| T |
7927406 |
aattgtatcggtatggtacaaattgtcttctgtactatgccatattgattctcttctat |
7927464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 499 - 719
Target Start/End: Original strand, 7927676 - 7927895
Alignment:
| Q |
499 |
tttttaatcttttgtaattggtatcaggatttctgtaggccttgcaagggtaggaaagttgtcaaaggaacaaagtcaatcaagttggata-ttatacct |
597 |
Q |
| |
|
||||||||||||||| |||||||||| |||||| | | ||||| | ||| |||||||| ||||||||||||||| |||||||| ||| |||| ||| |
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|
| T |
7927676 |
tttttaatcttttgttgttggtatcagagtttctgcaagtcttgccaaggtgccaaagttgtaaaaggaacaaagtcagtcaagttgcatacttat-cct |
7927774 |
T |
|
| Q |
598 |
ggtaattattatttttcaatctttttggaatgcagtgttggaatttgttatgtaggccatg-ttatatggcatacaaagagaaaaatgttacatgaatga |
696 |
Q |
| |
|
|||||||||||||| ||| | ||| |||| || ||||| || |||| |||||||||||| ||||||||||||||||| |||| |||| ||| ||||| |
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|
| T |
7927775 |
ggtaattattattt--caaattgtttcgaatccattgttgtaacttgtaatgtaggccatggttatatggcatacaaaggaaaaattgtttcattaatga |
7927872 |
T |
|
| Q |
697 |
gaaatttccatgttgatttctct |
719 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
7927873 |
taaatttccatattgatttctct |
7927895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 805 - 866
Target Start/End: Original strand, 8642080 - 8642141
Alignment:
| Q |
805 |
gaagcggtggagcagatcctgatggagatcatcctggtgatctatatgttactatcaaggta |
866 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||| ||||||||||| |||||||||||||||||| |
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|
| T |
8642080 |
gaagtggtggtgcagatcctgaaggagatcgacctggtgatctttatgttactatcaaggta |
8642141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 8640299 - 8640360
Alignment:
| Q |
9 |
gttcctcccggtacaaaacctaaaacttgtaagcgatgtaaagggtcaggaaaggtcagtat |
70 |
Q |
| |
|
|||||||| ||||||| |||| |||| || ||||| ||||||||||||||| ||||||||| |
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|
| T |
8640299 |
gttcctcctggtacaagacctgaaacctgcaagcgttgtaaagggtcaggagtggtcagtat |
8640360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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