View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4408-Insertion-2 (Length: 1101)
Name: NF4408-Insertion-2
Description: NF4408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4408-Insertion-2 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 957; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 957; E-Value: 0
Query Start/End: Original strand, 7 - 1095
Target Start/End: Complemental strand, 31690381 - 31689274
Alignment:
| Q |
7 |
acataaaaccgatttgattcaaaatgatgtcgatctagtaggttaatactccaaattatccggtctaagatgatgtcaaattgtgaaacttaataagagc |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31690381 |
acataaaaccgatttgattcaaaatgatgtcgatctagtaggttaatactccaaattatccggtctaagatgatgtgaaattgtgaaacttaataagagc |
31690282 |
T |
|
| Q |
107 |
ttcatgttatggaataactaattgactatgtctatatatgtactcacacgatgattttgcatgacaagacaatctgtactcagcttctttaataaatctg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31690281 |
ttcatgttatggaataactaattgactatgtctatatatgtactcacacgatgattttgcatgacaagacaatctgtactcagcttctttaataaatctg |
31690182 |
T |
|
| Q |
207 |
gaggaaatctgcagcaaaagagaagtggtttataacttgcatactatactcagttacaaaatgttgaagaactctaatttaaagacttttgaatgattga |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31690181 |
gaggaaatctgcagcaaaagagaagtggtttgtaacttgcatactatactcagttacaaaatgttgaagaactctaatttaaagacttttgaatgattga |
31690082 |
T |
|
| Q |
307 |
aaccatttcttttgtcaccatcttctcatgtttcgttgctggtaaaggctaaggaatctgataaatctgataatgtcttataggaaggaactagttgaga |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31690081 |
aaccatttcttttgtcaccatcttctcatgtttcgttgctggtaaaggctaaggaatctgataaatctgataatgtcttataggaaggaactagttgaga |
31689982 |
T |
|
| Q |
407 |
ttttcacttatgctaaaagtaataatttgaattaggacaacaaaaacacacttcctaagttagtgtcagcctttatttgattgttcatatggatatccaa |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
31689981 |
ttttcacttatgctaaaagtaataatttgaattaggacaacaaaaacacacttcctaagttagtttcagcctttatttgattgttcatatggatatccaa |
31689882 |
T |
|
| Q |
507 |
tagaaaaaatagaatttcttacactttggaag----------tgtacacatgggaaaccaattgagaagggaatgcaacaagtagatttcaacacgcgat |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31689881 |
tagaaaaaatagaatttcttacactttggaagtgtttgatgttgtacacatgggaaaccaattgagaagggaatgcaacaagtagatttcaacacgcgat |
31689782 |
T |
|
| Q |
597 |
aaaaaggacatatagctcacatcagccatactaatcaacccattgagggatcaaagtgcaacctcagaaaaatacaattacctttgaaatacagatcctt |
696 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31689781 |
aaaaaggacatatagctcacatcagccatactaatcaacccattgagggatcaaattgcaacctcagaaaaatacaattacctttgaaatacagatcctt |
31689682 |
T |
|
| Q |
697 |
ctattttcgtgttctccacaaattgaaggctacttgcctgacttcttgcactaaattcttcaagaatatcattgtcctatcatcaagagaaaaacagcca |
796 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31689681 |
ctattttcgtattctccacaaattgaaggctacttgcctgacttcttgcactaaattcttcaagaatatcattgtcctatcatcaagagaaaaacagcca |
31689582 |
T |
|
| Q |
797 |
aacttgtaaatgtagaagaagaaaaaaggacaggaatgtgctgtagctcgtcagaaggcttcaa-ttttttcaacatttcaaatcataaaatattgttca |
895 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| |||||||||||||| |||||||||||||||||||| |
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|
| T |
31689581 |
aacttgtaaatgtagaagaagaaaaaaggacaggaatgtgctgtaacttgtcagaagtcttcaatttttttcaacatttgaaatcataaaatattgttca |
31689482 |
T |
|
| Q |
896 |
aggtgttcaatatatgcataaaatacatcaagtcaacataatagctaatctttctattttctccatgat-agattttgaaatccaaatg-aactatgaca |
993 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||| |
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|
| T |
31689481 |
aggtgttcaatatatgcataaaatatatcaagtcaacataatagctaatctttctattttctccatggtaagattttgaaatccaaatgaaactatgaca |
31689382 |
T |
|
| Q |
994 |
gc-atgtccacagcac-acg-aacataataagcga-tttgattgtatgcagtgtgactgcacgcagt-agccacatgtggactgtatgatctttgatc-g |
1087 |
Q |
| |
|
|| ||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
31689381 |
gcaatgtccacagcacaacgaaacataataagcgattttgattgtatgcagtgtgactgcacgcagtaagccacatgtggactgtatgatctttgatcgg |
31689282 |
T |
|
| Q |
1088 |
acagtcta |
1095 |
Q |
| |
|
|||||||| |
|
|
| T |
31689281 |
acagtcta |
31689274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 674 - 896
Target Start/End: Complemental strand, 31682268 - 31682051
Alignment:
| Q |
674 |
ttacctttgaaatacagatccttctattttcgtgttctccacaaattgaaggctacttgcctgacttcttgcactaaattcttcaagaatatcattgtcc |
773 |
Q |
| |
|
|||||| |||||||||||||||||||| | | |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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|
| T |
31682268 |
ttacctctgaaatacagatccttctatataggcattcttcacaaattgaaggctacttgcctgatttcttgcactaaattcttcaagaatattattgtcc |
31682169 |
T |
|
| Q |
774 |
tatcatcaagagaaaaacagccaaacttgtaaatgtagaagaagaaaaaaggacaggaatgtgctgtagctcgtcagaaggcttcaa-ttttttcaacat |
872 |
Q |
| |
|
||| ||||||| ||||| |||||||||||||||||||||| | | |||||| ||||||||||||| | || | ||| |||||| |||| ||||||| |
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|
| T |
31682168 |
tatgatcaaga-aaaaaaagccaaacttgtaaatgtagaa----agagaaggactggaatgtgctgtaaattgtaacaagtcttcaacttttctcaacat |
31682074 |
T |
|
| Q |
873 |
ttcaaatcataaaatattgttcaa |
896 |
Q |
| |
|
|||||||||| |||||||||||| |
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|
| T |
31682073 |
ttcaaatcat-gaatattgttcaa |
31682051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 118 - 303
Target Start/End: Complemental strand, 31683184 - 31683000
Alignment:
| Q |
118 |
gaataactaattgactatgtctatatatgtactcacacgatgattttgcatgacaagacaatctgtactcagcttctttaataaatctggaggaaatctg |
217 |
Q |
| |
|
|||||| | |||||||| |||||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| || ||||||||||| ||| |
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|
| T |
31683184 |
gaataatttattgactaggtctatgtat--actcacacgatgattttgcatgataagacaatctgtactcaacttctttaacaagtctggaggaaacctg |
31683087 |
T |
|
| Q |
218 |
cagcaaaagagaagtggtttataacttgcatactatactcagttac-aaaatgttgaagaa-ctctaatttaaagacttttgaatgat |
303 |
Q |
| |
|
||| |||||||||||||| |||||||| ||| || ||||||| || |||||||| ||||| | ||| ||||||||||||||||||| |
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|
| T |
31683086 |
caggaaaagagaagtggtccataacttgaatatta-actcagtgacaaaaatgttaaagaatgtgtaaattaaagacttttgaatgat |
31683000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 108 - 246
Target Start/End: Complemental strand, 31701564 - 31701428
Alignment:
| Q |
108 |
tcatgttatggaataactaattgactatgtctatatatgtactcacacgatgattttgcatgacaagacaatctgtactcagcttctttaataaatctgg |
207 |
Q |
| |
|
||||||| ||||||||| ||||||| ||| ||||||| |||||| |||||||||||||||||| |||||||||||||| ||||||||| || ||||| |
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|
| T |
31701564 |
tcatgttgaggaataacttattgactgtgtatatatat--actcacttgatgattttgcatgacaatacaatctgtactcaacttctttaacaagtctgg |
31701467 |
T |
|
| Q |
208 |
aggaaatctgcagcaaaagagaagtggtttataacttgc |
246 |
Q |
| |
|
||||||||||||| ||| | ||| ||||| ||| ||||| |
|
|
| T |
31701466 |
aggaaatctgcaggaaaggtgaactggttaatatcttgc |
31701428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 31705560 - 31705476
Alignment:
| Q |
141 |
tatatgtactcacacgatgattttgcatgacaagacaatctgtactcagcttctttaataaatctggaggaaatctgcagcaaaa |
225 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||| |||| |
|
|
| T |
31705560 |
tatatttactcacaacatgattttgcatgacaagacaatctgtactcaacttctttaacaactctggaggaaatctgcaggaaaa |
31705476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 674 - 805
Target Start/End: Complemental strand, 31694764 - 31694632
Alignment:
| Q |
674 |
ttacctttgaaatacagatccttctattttcgtgttctccacaaattgaaggctacttgcctgacttcttgcactaaattcttcaagaatatcattgtcc |
773 |
Q |
| |
|
||||||||||||||||||| ||| ||| ||| ||||||||||||||||||||| || |||||| || ||| ||| |||||||||||||| |||||| |
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|
| T |
31694764 |
ttacctttgaaatacagattcttttatattcacgttctccacaaattgaaggctgctagcctgattttctgctgcaaaatcttcaagaatatcgttgtcc |
31694665 |
T |
|
| Q |
774 |
tatcatcaagagaa-aaacagccaaacttgtaa |
805 |
Q |
| |
|
||||||||||| || |||| |||||||||||| |
|
|
| T |
31694664 |
tatcatcaagaaaaggaacaaccaaacttgtaa |
31694632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 675 - 802
Target Start/End: Complemental strand, 31717677 - 31717549
Alignment:
| Q |
675 |
tacctttgaaatacagatccttctattttcgtgttctccacaaattgaaggctacttgcctgacttcttgcactaaattcttcaagaatatcattgtcct |
774 |
Q |
| |
|
||||||||||| |||| ||||||||| | | ||||||||||||||||| ||||||||||| || |||| | |||||||||||||| | ||||||| |
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| T |
31717677 |
tacctttgaaaaacagttccttctatatgtgcattctccacaaattgaagagtacttgcctgattttttgcctttaattcttcaagaatgtttttgtcct |
31717578 |
T |
|
| Q |
775 |
atcatcaagagaaa-aacagccaaacttg |
802 |
Q |
| |
|
|||||||||| ||| |||||||||||||| |
|
|
| T |
31717577 |
atcatcaagaaaaagaacagccaaacttg |
31717549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 674 - 806
Target Start/End: Complemental strand, 31705262 - 31705128
Alignment:
| Q |
674 |
ttacctttgaaatacagatccttctattttcgtgttctccacaaattgaaggctacttgcctgacttcttgcactaaattcttcaagaatatcattgtcc |
773 |
Q |
| |
|
|||||||| |||||||| ||||||||| | | ||||||||||||||||| ||||||| ||| || |||| |||||||||||||||||| |||||| |
|
|
| T |
31705262 |
ttacctttcaaatacagttccttctatgcttgcattctccacaaattgaagagtacttgcttgattttttgctttaaattcttcaagaatatttttgtcc |
31705163 |
T |
|
| Q |
774 |
tatcatcaagagaaa--aacagccaaacttgtaaa |
806 |
Q |
| |
|
|||||| || | ||| || ||||||||||||||| |
|
|
| T |
31705162 |
tatcataaataaaaaagaatagccaaacttgtaaa |
31705128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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