View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4408-Insertion-4 (Length: 981)
Name: NF4408-Insertion-4
Description: NF4408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4408-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 462 - 961
Target Start/End: Complemental strand, 41738729 - 41738236
Alignment:
| Q |
462 |
actcaattacatcaagggtacataattaactagtataactaacgtttagggctaatatttttctctattatgtatactgtgatgaatccgttgcaaccat |
561 |
Q |
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| T |
41738729 |
actcaattacatcaatggtacataattaactagtataactaacgtttagggctaatatttttctctattatgtatactgtgatgaatccgttgcaaccat |
41738630 |
T |
|
| Q |
562 |
gttgtgtgggaggtatgttttgtggaagtgttgtatgtgataaaccagaactttcattcttttgggaaaatggttggtttgctgtttaccaaatggtgca |
661 |
Q |
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| T |
41738629 |
gttgtgtgggaggtatgttttgtggaagtgttgtatgtgataaaccagaactttcattcttttgggaaaatggttggtttgctgtttaccaaatggtgca |
41738530 |
T |
|
| Q |
662 |
atccaatttgaagagaaaattcgctgatccttaagaaaaattgtattattttatagtgttctcaactttgtaaaatcttcaattacgatccaatcattga |
761 |
Q |
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| T |
41738529 |
atccaatttgaagagaaaattcgttgatccttaagaaaaattgtattattttatagtgttctcaactttgtaaaatcttcaattacgacccaatcattga |
41738430 |
T |
|
| Q |
762 |
ataatgaacaatgctaatgttagcaacacgta-aaaagtaatagtaacaatatactcttaataaaataccactatatagtaaattaatcggttgccttga |
860 |
Q |
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| T |
41738429 |
ataatgaacaatgctaatgttagcaacacgtaaaaaagtaatagtaacaatatactcttaataaaataccactatatagtaaa-taatcggttgccttga |
41738331 |
T |
|
| Q |
861 |
tcttcaatatctagagtatggtgatgttgtgacacttcttcctcattaattattgctaattcaatcacattatattagatattagcctaataaaaaccac |
960 |
Q |
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| T |
41738330 |
tcttcaatatctagatt----tgatgttttgaca-ttcttcctc-ttaattattgctaatccaatcacattatattagatattagcctaataaaaaccac |
41738237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 372
Target Start/End: Complemental strand, 41739517 - 41739154
Alignment:
| Q |
8 |
actgcatcacttgtgaatcaattatcatcaaatcttagacgcattcaaagcttgggaataaataaaatagcaattggattattagaacctatagggtgtt |
107 |
Q |
| |
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| T |
41739517 |
actgcatcacttgtgaatcaattatcatcaaatcttagacgcattcaaagcttgggaataaataaaatagcaattggattattagaacctatagggtgtt |
41739418 |
T |
|
| Q |
108 |
tgcctatggtaaccgagactgagacaccttcatatgagaaatgcaatgacaatttcaacctatttgccatgaatcacaattacttgttgctccaagctgt |
207 |
Q |
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| T |
41739417 |
tgcctatggtaaccgagactgagacaccttcatatgagaaatgcaatgacaatttcaacctatttgccatgaatcacaattacttgttgctccaagctgt |
41739318 |
T |
|
| Q |
208 |
ggaagaacttaacaaggaaatgggaaaatcagttttcgtgacactagacctctacccctctttcctatccataattgcattaatgcagaaaaaccctaat |
307 |
Q |
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| T |
41739317 |
ggaagaacttaacaaggaaatgggaaaatcagttttcgtgacactagacctctacacctctttcctatccataattgcattaatgcagaaaaaccctaat |
41739218 |
T |
|
| Q |
308 |
ggtatttatatagcattagttgannnnnnncaagcaaaacctagctcttatattctttataaggg |
372 |
Q |
| |
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| T |
41739217 |
ggtatttatatcgcattagttga-ttttttcaagcaaaacctagctcttatattctttataaggg |
41739154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 8 - 320
Target Start/End: Complemental strand, 41747718 - 41747412
Alignment:
| Q |
8 |
actgcatcacttgtgaatcaattatcatcaaatcttagacgcattcaaagcttgggaataaataaaatagcaattggattattagaacctatagggtgtt |
107 |
Q |
| |
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||||| ||||||||||| ||||| |||| |||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||| |||| |
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| T |
41747718 |
actgcttcacttgtgaagcaattgtcattaaatcttaaacgcattcaaagtttgggaataaataaaatagcaattgtattattagagcctataggatgtt |
41747619 |
T |
|
| Q |
108 |
tgcctatggtaaccgagactgagacaccttcatatgagaaatgcaatgacaatttcaacctatttgccatgaatcacaattacttgttgctccaagctgt |
207 |
Q |
| |
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||||||| | ||| |||| | |||| |||||||||||||||| | ||| ||| | ||||||||||||||| ||||||| ||||||||||| |
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| T |
41747618 |
tgcctatagcaactgagaata------cttcgtatgagaaatgcaatgggactttgaacacggtagccatgaatcacaatcacttgttactccaagctgt |
41747525 |
T |
|
| Q |
208 |
ggaagaacttaacaaggaaatgggaaaatcagttttcgtgacactagacctctacccctctttcctatccataattgcattaatgcagaaaaaccctaat |
307 |
Q |
| |
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||||||||| ||||| ||||| |||||||| |||||||||||||||||||||| | ||||||||| |||| |||||||| |||||||| ||||| | | |
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| T |
41747524 |
ggaagaactcaacaaagaaattggaaaatcggttttcgtgacactagacctcttcaactctttcctctccacaattgcatcaatgcagagaaaccatgaa |
41747425 |
T |
|
| Q |
308 |
ggtatttatatag |
320 |
Q |
| |
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|||| |||||||| |
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| T |
41747424 |
ggtaattatatag |
41747412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 299
Target Start/End: Complemental strand, 41733440 - 41733333
Alignment:
| Q |
192 |
tgttgctccaagctgtggaagaacttaacaaggaaatgggaaaatcagttttcgtgacactagacctctacccctctttcctatccataattgcattaat |
291 |
Q |
| |
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||||||||||| |||| || |||| |||||| ||||||||||||| || ||| |||||||||| |||||| ||||||||| ||| |||||||| || |
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| T |
41733440 |
tgttgctccaaattgtgcaacaactaaacaagcaaatgggaaaatcggtcttcatgacactagatctctacaactctttcctctccgtaattgcaaagat |
41733341 |
T |
|
| Q |
292 |
gcagaaaa |
299 |
Q |
| |
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|||||||| |
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| T |
41733340 |
gcagaaaa |
41733333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 41733567 - 41733506
Alignment:
| Q |
59 |
ttgggaataaataaaatagcaattggattattagaacctatagggtgtttgcctatggtaac |
120 |
Q |
| |
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||||||||||| |||||||||||||| |||||||| ||||| || ||| |||||||| |||| |
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| T |
41733567 |
ttgggaataaacaaaatagcaattggtttattagagcctattggatgtgtgcctatgataac |
41733506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 41758346 - 41758309
Alignment:
| Q |
59 |
ttgggaataaataaaatagcaattggattattagaacc |
96 |
Q |
| |
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||||||||||||||| |||||||||||||||| ||||| |
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|
| T |
41758346 |
ttgggaataaataaagtagcaattggattattggaacc |
41758309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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