View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4408-Insertion-5 (Length: 690)
Name: NF4408-Insertion-5
Description: NF4408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4408-Insertion-5 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 146 - 690
Target Start/End: Complemental strand, 42242576 - 42242030
Alignment:
| Q |
146 |
aataaacagtccctcacgtaacgtgatatagcacatataattcgaaacacatgaaagtggaaaaatggaagtaaagtaaaaagtaattttaatcttcata |
245 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42242576 |
aatacacagtccctcacgtaacgtgatatagcacatataatttgaaacacatgaaagtggaaaaatggaagtaaagtaaaaagtaattttaatcttcata |
42242477 |
T |
|
| Q |
246 |
cattttcaatgtaaaaagtgttatagacctaacatannnnnnnnnncatgttctattgacgtgtgggttgactctccatcatctcatannnnnnnnn--- |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42242476 |
cattttcaatgtaaaaagtgttatagacctaacatatttttttt--catgttctattgacgtgtgggttggctctccatcatctcatttttttttttttc |
42242379 |
T |
|
| Q |
343 |
cttc-tctaattgcaatggaaagagcttgtgtgctcgagagaattccaatgtaatcatacaaaagtgaaaagcaaaactaagataacaaagcgtgtggaa |
441 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42242378 |
cttcctctaattgcaatggaaagagcttgtgtgctggagagaattccaatgtaatcatacaaaagtgaaaagcaaaactaagataacaaagcgtgtggaa |
42242279 |
T |
|
| Q |
442 |
ttgttgctcctacaatggcatggcacggaaactaaccaaggaaatggttacattgaaatcatattaattgaatctttgcgacaaacatgtggaattattt |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42242278 |
ttgttgctcctacaatggcatggcacggaaactaaccaagaaaatggttacattgaaatcatattaattgaatctttgcgacaaacatgtggaattattt |
42242179 |
T |
|
| Q |
542 |
gaattttgcaagcaataaaaagtatggtccacggtgctagattgaatggattgtggatgcctctggcgggagacctaannnnnnnnnnnnnnnnaaggag |
641 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42242178 |
gaattttgcaagcaataaaaagtatggaccacggtgctagattgaatggattgtggatgcctctggcgggagacctaatttatttttattttttaaggag |
42242079 |
T |
|
| Q |
642 |
acctaattgaaaagacaaacacatgggtccaatgcccctttattcctag |
690 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42242078 |
acctaattgaaaagacaaacacatgggtccaatgcccctttattcctag |
42242030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 42245928 - 42245786
Alignment:
| Q |
8 |
tccttctctgtcatcgtaggtggcattttgtatagagaagttttaaattttccaatcacggtccaattcattttttagccacgccaccgtcattgtattc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42245928 |
tccttctctgtcatcgtaggtggcattttgtatggagaagttttaaattttccaatcacggtccaattcattttttagccacgccaccgtcattgtattc |
42245829 |
T |
|
| Q |
108 |
tcatgcaatcctacgtcaaggacaagcaacaatattacaataa |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42245828 |
tcatgcaatcctacgtcaaggacaagcaacaatattactataa |
42245786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University