View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4408-Insertion-7 (Length: 288)
Name: NF4408-Insertion-7
Description: NF4408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4408-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 18280412 - 18280330
Alignment:
| Q |
8 |
caccgagctgaaactaataaagacaacgaaagaagaagttgactagtcacaaacaacagaaaaaatgaagccagatgaaaagg |
90 |
Q |
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| T |
18280412 |
caccgagctgaaactaataaagacaacgaaagaagaagttgactagtcacaaacaacagaaaaaatgaagccaggtgaaaagg |
18280330 |
T |
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Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 145 - 236
Target Start/End: Complemental strand, 18280312 - 18280220
Alignment:
| Q |
145 |
tgaaatcagagtgcaaaaataattcacttttttacataaaataaatgagaagtacattttgtcgaaga-agatgtgaaactcacactttgtaa |
236 |
Q |
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| T |
18280312 |
tgaaatcagagtgcaaaaataattcacttttttacaaaaaataaacgagaagtacattttgtcgaagagagatgtgaaactcacactttgtaa |
18280220 |
T |
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