View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4408-Insertion-8 (Length: 210)
Name: NF4408-Insertion-8
Description: NF4408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4408-Insertion-8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 7 - 210
Target Start/End: Original strand, 47598035 - 47598238
Alignment:
| Q |
7 |
agttatacgaagaatgaatatcttcaattgcagcagtgatactaaactcacattctgaaattggaaccagaaatccctgctttggaacaggctgtgtttg |
106 |
Q |
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| T |
47598035 |
agttatacgaagaatgaatatcttcaattgcagcagtgatactaaactcacattctgaaattggaaccagaaatccctgctttggaacaggctgtgtttg |
47598134 |
T |
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| Q |
107 |
tccagtatgcagctggtgtggacggctaatgttcaggaactgccgtatctgagagacnnnnnnngaaacaaataatcagcagaaagcagtgtagtgcact |
206 |
Q |
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| T |
47598135 |
tccagtatgcagctggtgtggacggctaatgttcaggaactgccgtatctgagagacaaaaaaagaaacaaattatcagcagaatgcagtgtagtgcact |
47598234 |
T |
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| Q |
207 |
caag |
210 |
Q |
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|||| |
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| T |
47598235 |
caag |
47598238 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 37823187 - 37823155
Alignment:
| Q |
79 |
atccctgctttggaacaggctgtgtttgtccag |
111 |
Q |
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| T |
37823187 |
atccctgctttggaacaggctgtgtttgtccag |
37823155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 37823225 - 37823186
Alignment:
| Q |
7 |
agttatacgaagaatgaatatcttcaattgcagcagtgat |
46 |
Q |
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| T |
37823225 |
agttatacgtagaatgaatatcttcaattgcaacagtgat |
37823186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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