View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4408_high_1 (Length: 482)
Name: NF4408_high_1
Description: NF4408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4408_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 133 - 350
Target Start/End: Original strand, 25885905 - 25886122
Alignment:
| Q |
133 |
tcactaattctaaattcatgttctgttacaaaataaagataactgtgattatagaccttagagataaagaggtttgacataaactaaaactaagacaaat |
232 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25885905 |
tcactaattctaaattcattttctgttacaaaataaagataactgtgattatagaccttagagataaagaggtttgacataaactaaaactaagacaaat |
25886004 |
T |
|
| Q |
233 |
aaagtgtgattataaagcttaaggtattaaatgtccaaatagagtacaattaagacaagtaatgtaatcataaaacttaaagagtgcatgaatgaatctt |
332 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25886005 |
aaagtgtgattataaagcttaaggtattaaatgtccaaatagagtacaattaagacaagtaatgtaatcataaaacttaaagagtgcatgagtgaatctt |
25886104 |
T |
|
| Q |
333 |
aatttatcttagacagtt |
350 |
Q |
| |
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|||||||||||||||||| |
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| T |
25886105 |
aatttatcttagacagtt |
25886122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 25884043 - 25883909
Alignment:
| Q |
1 |
tcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggcctaagctactcaaattattcctacaacttcatttccgtcaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25884043 |
tcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggcctaagctactcaaattattcctacaacttcatttccgtcaaa |
25883944 |
T |
|
| Q |
101 |
aacaacaaccttcacatcaaccaatcaaccactca |
135 |
Q |
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||||||||| ||||||||||||||||||||||||| |
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| T |
25883943 |
aacaacaacattcacatcaaccaatcaaccactca |
25883909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 25905377 - 25905245
Alignment:
| Q |
1 |
tcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggcctaagctactcaaattattcctacaacttcatttccgtcaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25905377 |
tcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggcctaagctactcaaattattcctacaacttcatttccgtcaaa |
25905278 |
T |
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| Q |
101 |
aacaacaaccttcacatcaaccaatcaaccact |
133 |
Q |
| |
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|| |||||||||||||||||||||||||||||| |
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| T |
25905277 |
aataacaaccttcacatcaaccaatcaaccact |
25905245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 25924220 - 25924086
Alignment:
| Q |
1 |
tcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggcctaagctactcaaattattcctacaacttcatttccgtcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25924220 |
tcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaactttatttccgtcaaa |
25924121 |
T |
|
| Q |
101 |
aacaacaaccttcacatcaaccaatcaaccactca |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
25924120 |
aacaacaaccttcacatcaaccaatcaaccactca |
25924086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 25961049 - 25961181
Alignment:
| Q |
1 |
tcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggcctaagctactcaaattattcctacaacttcatttccgtcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25961049 |
tcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaacttcatttccgtcaaa |
25961148 |
T |
|
| Q |
101 |
aacaacaaccttcacatcaaccaatcaaccact |
133 |
Q |
| |
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|| |||||||||||||||||||||||||||||| |
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| T |
25961149 |
aataacaaccttcacatcaaccaatcaaccact |
25961181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 383 - 466
Target Start/End: Original strand, 25886200 - 25886283
Alignment:
| Q |
383 |
actacaaactatgatgaaaatacacatataaattgtatacaaatctacatcatcaccaacttttttccaatggagactatgatg |
466 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25886200 |
actacaaactatgatgaaaatacacatataaattgcatacaaatctacattatcaccaacttttttccaatggagactatgatg |
25886283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 151 - 336
Target Start/End: Original strand, 25925967 - 25926154
Alignment:
| Q |
151 |
tgttctgttacaaaataaagataact---gtgattatagaccttagagataaagaggtttgacataaactaaaactaagacaaataaagtgtgattataa |
247 |
Q |
| |
|
|||| |||| ||||||||| |||||| ||| ||||||| ||||||| |||||| |||||| ||| ||||||||||| |||||||||||||||||||| |
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| T |
25925967 |
tgttttgttgcaaaataaatataactaaagtggttatagagcttagaggtaaagaactttgacctaagctaaaactaaggcaaataaagtgtgattataa |
25926066 |
T |
|
| Q |
248 |
agctta-aggtattaaatgtccaaatagagtacaattaagacaagtaatgtaatcataaaacttaaagagtgcatgaatgaatcttaatt |
336 |
Q |
| |
|
|| ||| ||||| |||||||||| || || || |||||||||||||||| ||| |||||||||| |||||||||| || |||||||||| |
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| T |
25926067 |
agtttagaggtagtaaatgtccacattgactaaaattaagacaagtaatttaaccataaaactt--agagtgcatggatcaatcttaatt |
25926154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 350 - 404
Target Start/End: Original strand, 25907662 - 25907716
Alignment:
| Q |
350 |
tctaattatgttacatctttgtctgcaacctatactacaaactatgatgaaaata |
404 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||| |||||||| |
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|
| T |
25907662 |
tctaattatgttacatctttttctgcaacctatactaaaaactatggtgaaaata |
25907716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 25959652 - 25959564
Alignment:
| Q |
153 |
ttctgttacaaaataaagataact---gtgattatagaccttagagataaagaggtttgacataaactaaaactaagacaaataaagtg |
238 |
Q |
| |
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||||||| ||||||||| |||||| ||||||||| | |||||||||||||| |||||||||| |||||||||| |||||||||||| |
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| T |
25959652 |
ttctgttgcaaaataaaaataactaaagtgattataaagcttagagataaagaagtttgacatagactaaaactataacaaataaagtg |
25959564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 446
Target Start/End: Original strand, 25907753 - 25907800
Alignment:
| Q |
399 |
aaaatacacatataaattgtatacaaatctacatcatcaccaactttt |
446 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || |||||||| |||| |
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|
| T |
25907753 |
aaaatacacatataaattgtataaaaatctatattatcaccaattttt |
25907800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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