View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4408_high_2 (Length: 400)
Name: NF4408_high_2
Description: NF4408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4408_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 381
Target Start/End: Complemental strand, 12897046 - 12896682
Alignment:
| Q |
17 |
agttatgtctaactacagtagcttgttttagtttcaccaagaaatgcaaagaaattacgttccttcctttcgtcctcctgttgaagaaccttcagaagtt |
116 |
Q |
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| T |
12897046 |
agttatgtctaactatagtagcttgttttagtttcaccaagaaatgcaaagaaatttcgttcctccctttcgtcctcctgttgaagaaccttcagaagtt |
12896947 |
T |
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| Q |
117 |
catcaaaaaccatgaagtctttgacgaaatggtgagaaaa-tcagatgatgcttgttttcatgatataacattcacaaacatcatcttgttatatctata |
215 |
Q |
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| T |
12896946 |
catcaaaaaccatgaagtctttgacgaaatggtgagaaaaatcagatgatgctcgttttcatgatataacat-cacaaacatcatcttgttacatctata |
12896848 |
T |
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| Q |
216 |
tggatgtcattattcttatgaattattgtgattcaaccttgttcggatatgcttagcttgagaaatactagaagggatttaatagttctaaagatttgtg |
315 |
Q |
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| T |
12896847 |
tggatgtcattattcttatgaattattgtgattcaaccttgttcggatatgcttaacttgagaaatactagaagagacttaatagttctaaagatttgtg |
12896748 |
T |
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| Q |
316 |
aaatgtgaatatgacaattcaacctcattctatttgacttctaacatgaacctactacctttcatt |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12896747 |
aaatgtgaatatgacaattcaacctcattctatttgacttctaacatgaacctactacctttcatt |
12896682 |
T |
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