View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4408_low_1 (Length: 752)
Name: NF4408_low_1
Description: NF4408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4408_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 6 - 472
Target Start/End: Complemental strand, 32728888 - 32728407
Alignment:
| Q |
6 |
agaagcaaaggcataaaacattaaacaaatctagcagctcctcttatccattggttggagannnnnnnn-gcaagaaatctcaattattca--------- |
95 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32728888 |
agaaacaaaggcatacaacattaaacaaatctagcagctcctcttatccattggttggagatttttttatgcaagaaatctcaattattcattcattatt |
32728789 |
T |
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| Q |
96 |
--ataaagttgaaaaccttctatagtccttcttctaaagaaagcaaaattggaacgtatttatttaatgatagaaataattgagggacaaagttgggtgt |
193 |
Q |
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| T |
32728788 |
caataaagttgaaaaccttctatagtccttcttctaaagaaagcaaaattggaacgtatttatttaatgatagaaataattgagggacaaagttgggtgt |
32728689 |
T |
|
| Q |
194 |
gttatactttttcttcacacattcttctactac---caaagtagctctaaaatgtctatattaaggacccacttgcttgcaaagctctatattctcaaac |
290 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32728688 |
gttatactttttcttcacacattcttctactactaccaaagtagctctaaaatgtctatattaaggacccacttgcttgcaaagctctatattctcaaac |
32728589 |
T |
|
| Q |
291 |
ccacttatttttattaaaccacataaaaacagaaccaagtcatgattatgtttaaggttcagacaaaagggtgttcatattttatttcctttgtcattat |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32728588 |
ccacttatttttattaaaccacataaaaacagaaccaagtcatgattatgtttaaggttcagacaaaagggtgttcgtattttatttcctttgtcattat |
32728489 |
T |
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| Q |
391 |
ctaatccaaatttatgtgtcaatactacaaaaattcccatctttacctttttccctataatttgcaaagactacaatatcac |
472 |
Q |
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| T |
32728488 |
ctaatccaaatttatgtgtcaatactacaaaaattcccatctttacctttttccctataatttgcaaagactacaatatcac |
32728407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 555 - 736
Target Start/End: Complemental strand, 32728324 - 32728143
Alignment:
| Q |
555 |
cattcgttccatgtagcactggataaatagttaaactccgtcacataaggttgtacggttaaacttttatcaatgagttaacacattgtggacatatctc |
654 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32728324 |
cattcgttccatgtagcactggataaatagttaaactccgtcacataaggttgtacggttaaacttttatcaatgagttaacacattgtggacatatctc |
32728225 |
T |
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| Q |
655 |
aatacccaattcagcaagcataaaatattttgaagttgatacctagannnnnnnacagtgaccaatcatagtaagagaaatc |
736 |
Q |
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| T |
32728224 |
aatacccaattcagcaagcatataatattttgaagttgatacctagacccccccacagtgaccaatcataggtagagaaatc |
32728143 |
T |
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