View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4408_low_11 (Length: 229)
Name: NF4408_low_11
Description: NF4408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4408_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 2418714 - 2418914
Alignment:
| Q |
12 |
cagagacacaaaaacgactttctgaagaaatgatgtcgcgaatcaccaaatttgattttgttggcaatctgtcacgaatcaatctccacacaaaaattga |
111 |
Q |
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| T |
2418714 |
cagagacacaaaaacgactttctgaagaaatgatgccgcgaatcaccaaatttgattttgttgccaaactgtcacaaatcaatctccacacaaaaattga |
2418813 |
T |
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| Q |
112 |
gactttcgaagacacctgattatgccaaactaaatctgttaatggttccatctgaggagactcccgagaagttaataattagtaaacgtcagagacttaa |
211 |
Q |
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| T |
2418814 |
gactttcgaaggcacctgattatgccaaactaaatctgttaatggttccacctgaggagactcccgagaagttaataattagtaaacgccagagacttaa |
2418913 |
T |
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| Q |
212 |
t |
212 |
Q |
| |
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| |
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| T |
2418914 |
t |
2418914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 149
Target Start/End: Complemental strand, 17041310 - 17041195
Alignment:
| Q |
34 |
tgaagaaatgatgtcgcgaatcaccaaatttgattttgttggcaatctgtcacgaatcaatctccacacaaaaattgagactttcgaagacacctgatta |
133 |
Q |
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| T |
17041310 |
tgaagagattatgttgcgattcaccaaatttgatttagttggcaaccggtcacgcagcagtcttcatgcaaaaattgagacctttagaggcacctgatta |
17041211 |
T |
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| Q |
134 |
tgccaaactaaatctg |
149 |
Q |
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||||||| ||| |||| |
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| T |
17041210 |
tgccaaattaagtctg |
17041195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 140
Target Start/End: Original strand, 23874153 - 23874236
Alignment:
| Q |
57 |
ccaaatttgattttgttggcaatctgtcacgaatcaatctccacacaaaaattgagactttcgaagacacctgattatgccaaa |
140 |
Q |
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| T |
23874153 |
ccaagtttgattttgttggcaatatatcacgaagcagcctccacgcaaaaatagagaccttcaaagggacttgattatgccaaa |
23874236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 23818602 - 23818671
Alignment:
| Q |
71 |
gttggcaatctgtcacgaatcaatctccacacaaaaattgagactttcgaagacacctgattatgccaaa |
140 |
Q |
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| T |
23818602 |
gttggcaatctgtcacgaagcaacctctaggcaaagatagagactttcaacggcacctgattatgccaaa |
23818671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 4551962 - 4551857
Alignment:
| Q |
15 |
agacacaaaaacgactttctgaagaaatgatgtcgcgaatcaccaaatttgattttgttggcaatctgt--cacgaatcaatctccacacaaaaattgag |
112 |
Q |
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|||||||||||||| ||| ||||||||||||| | | |||| ||||||||||||||||||| | |||| ||| || |||||||||||||||||||| | |
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| T |
4551962 |
agacacaaaaacgaatttttgaagaaatgatggcatgtatcatcaaatttgattttgttggctaactgtcacacaaagcaatctccacacaaaaattgcg |
4551863 |
T |
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| Q |
113 |
actttc |
118 |
Q |
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|||||| |
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| T |
4551862 |
actttc |
4551857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 13230754 - 13230869
Alignment:
| Q |
17 |
acacaaaaacgactttctgaagaaatgatgtcgcgaatcaccaaatttgattttgttggcaatctgtcacgaatcaatctccacacaaaaattgagactt |
116 |
Q |
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||||||||| || ||| ||| ||||||||| | | ||||||||||||||||| |||| ||| |||| ||||| ||||||||| ||||||| |||||| |
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| T |
13230754 |
acacaaaaatgattttatgacgaaatgatgccacatatcaccaaatttgatttagttgacaacctgtaacgaaggaatctccacgtaaaaattaagactt |
13230853 |
T |
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| Q |
117 |
tcgaagacacctgatt |
132 |
Q |
| |
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| T |
13230854 |
tcaaagacacttgatt |
13230869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 36778534 - 36778453
Alignment:
| Q |
57 |
ccaaatttgattttgttggcaatctgtcacgaatcaatctccacacaaaaattgagactttcgaagacacctgattatgcca |
138 |
Q |
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|||||||||| || |||||||||||| |||||| |||||||||| | |||| || |||||| ||| ||||||||||||||| |
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| T |
36778534 |
ccaaatttgacttagttggcaatctgacacgaagcaatctccacgccaaaaccgaaactttcaaaggcacctgattatgcca |
36778453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 19249602 - 19249552
Alignment:
| Q |
57 |
ccaaatttgattttgttggcaatctgtcacgaatcaatctccacacaaaaa |
107 |
Q |
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|||||||||| || ||||||||||||||||||| |||||||||| |||||| |
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| T |
19249602 |
ccaaatttgacttagttggcaatctgtcacgaagcaatctccacgcaaaaa |
19249552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 14528394 - 14528469
Alignment:
| Q |
67 |
ttttgttggcaatctgtcacgaatcaatctccacacaaaaattgagactttcgaagacacctgattatgccaaact |
142 |
Q |
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| T |
14528394 |
ttttgttggaaatctatcgcgaagcaacctccacgcaaaaactgagaccttcaaaggaacctgattatgccaaact |
14528469 |
T |
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