View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4408_low_3 (Length: 548)

Name: NF4408_low_3
Description: NF4408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4408_low_3
NF4408_low_3
[»] chr2 (8 HSPs)
chr2 (82-539)||(6405207-6405660)
chr2 (1-81)||(3091841-3091923)
chr2 (37-83)||(3838907-3838953)
chr2 (40-75)||(11164271-11164306)
chr2 (40-78)||(36435822-36435860)
chr2 (40-81)||(36133115-36133156)
chr2 (40-81)||(43650436-43650477)
chr2 (37-82)||(44287467-44287512)
[»] chr5 (10 HSPs)
chr5 (1-84)||(39595374-39595459)
chr5 (37-80)||(12349923-12349966)
chr5 (40-81)||(2117529-2117570)
chr5 (43-86)||(10232644-10232687)
chr5 (43-77)||(4434615-4434649)
chr5 (43-81)||(11306840-11306878)
chr5 (40-84)||(22402777-22402822)
chr5 (44-81)||(42699194-42699231)
chr5 (44-84)||(16202866-16202906)
chr5 (62-90)||(36572854-36572882)
[»] chr4 (14 HSPs)
chr4 (1-81)||(47998694-47998775)
chr4 (37-82)||(30042271-30042316)
chr4 (37-82)||(38952827-38952872)
chr4 (40-81)||(42915108-42915149)
chr4 (43-81)||(9096080-9096119)
chr4 (1-81)||(31275246-31275328)
chr4 (40-75)||(36408099-36408134)
chr4 (40-75)||(36413222-36413257)
chr4 (40-82)||(5234359-5234401)
chr4 (40-86)||(28480422-28480468)
chr4 (37-82)||(40090821-40090867)
chr4 (44-81)||(30778153-30778190)
chr4 (40-81)||(46173678-46173719)
chr4 (37-81)||(37249047-37249091)
[»] chr8 (8 HSPs)
chr8 (42-81)||(7678875-7678914)
chr8 (40-86)||(8142898-8142945)
chr8 (40-75)||(44672128-44672163)
chr8 (40-82)||(9046959-9047001)
chr8 (40-81)||(21273599-21273640)
chr8 (37-77)||(38578391-38578431)
chr8 (37-81)||(40413252-40413296)
chr8 (54-90)||(44558543-44558579)
[»] chr7 (10 HSPs)
chr7 (40-75)||(32933688-32933723)
chr7 (2-81)||(8792489-8792567)
chr7 (43-85)||(11788372-11788415)
chr7 (40-82)||(12142025-12142067)
chr7 (40-81)||(6353870-6353911)
chr7 (40-85)||(10591293-10591338)
chr7 (44-77)||(32428213-32428246)
chr7 (40-81)||(37351879-37351920)
chr7 (40-81)||(43445548-43445589)
chr7 (42-86)||(21839017-21839061)
[»] chr3 (12 HSPs)
chr3 (40-82)||(29706044-29706086)
chr3 (43-81)||(32687848-32687886)
chr3 (1-81)||(7231895-7231977)
chr3 (1-81)||(46473228-46473310)
chr3 (40-75)||(49196837-49196872)
chr3 (44-82)||(1031315-1031353)
chr3 (2-81)||(11173551-11173632)
chr3 (37-90)||(16129513-16129566)
chr3 (40-77)||(41505495-41505532)
chr3 (44-81)||(46953094-46953131)
chr3 (43-86)||(43149226-43149270)
chr3 (37-81)||(47723249-47723293)
[»] chr1 (5 HSPs)
chr1 (40-81)||(49453618-49453659)
chr1 (37-75)||(27687417-27687455)
chr1 (40-86)||(33676042-33676088)
chr1 (40-81)||(2362510-2362551)
chr1 (43-87)||(4638069-4638113)
[»] chr6 (3 HSPs)
chr6 (37-75)||(2241721-2241759)
chr6 (40-82)||(32853032-32853074)
chr6 (40-81)||(32253922-32253963)
[»] scaffold0449 (1 HSPs)
scaffold0449 (44-81)||(7976-8013)
[»] scaffold0115 (1 HSPs)
scaffold0115 (40-81)||(15078-15119)
[»] scaffold0036 (1 HSPs)
scaffold0036 (44-81)||(18148-18185)
[»] scaffold0057 (1 HSPs)
scaffold0057 (40-84)||(39020-39064)


Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 82 - 539
Target Start/End: Complemental strand, 6405660 - 6405207
Alignment:
Q  82 aaaaataaattgttgggggaaatagagatgaggaaaattcccataatttataaaaagttcaattgtcttaaatttgatagatttaatctaattcaaagtt 181  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||    
T  6405660 aaaaataaattgttgggggaaacagagatgaggaaaatccccataatttataaaaagttcaattgtcttaaatttga--gatttaatctaattcaa-gtt 6405564  T
Q  182 aactatccattgttctcacacatttattgcttcgaatgacaatgttaatatgttagcatggtaagtatagaatcatcaccttcttattatcactcaactc 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||    
T  6405563 aactatccattgttctcacacatttattgcttcgaatgacaatgttaatatgttagcatggtaagtatagaattatcgccttcttattatcacttaactc 6405464  T
Q  282 cttaacttctctcccttaatcactaaattaatattatatctcctagttccacatatatg-aaaagggcaaacaatgacaaaagagtcttatatttaaggg 380  Q
    |||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||    
T  6405463 cttaacttctctaccttaatcactaagttaatattatatctcatagttccacatatatgaaaaagggcagacaatgacaaaagagtcttatatttaaagg 6405364  T
Q  381 taaaatgagtaattaatattacaacaaaatttagaagtgacatccaggtcaaaattttatttttccaaatgtgtaacctcttctagaaagaagtggataa 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  6405363 taaaatgagtaattaatattacaacaaaatttagaagtgacatccagttcaaaattttatttttgcaaatgtgtaaccttttctagaaagaagtggataa 6405264  T
Q  481 agaatcgctcgtagattaacggtnnnnnnnnttagactattactttttccaccctatgc 539  Q
    |||||||||||||||||||||||        ||||||||||| ||||||||||||||||    
T  6405263 agaatcgctcgtagattaacggt--aaaaaattagactattattttttccaccctatgc 6405207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 3091841 - 3091923
Alignment:
Q  1 ccattgtttttgaccaatgaaaagagagnnnnnnnn--ttatcacaaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    ||||||||||||||||||||||||||||          || |||||||||||||||||||||||||||||||||||| |||||    
T  3091841 ccattgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaataattgttcaaatatcactactc 3091923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 3838907 - 3838953
Alignment:
Q  37 ttatcacaaaagttgtatcaaataattgttcaaatatcattactcaa 83  Q
    |||||||||||||||||  |||||||||||||||||||||| |||||    
T  3838907 ttatcacaaaagttgtaaaaaataattgttcaaatatcatttctcaa 3838953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 75
Target Start/End: Complemental strand, 11164306 - 11164271
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatca 75  Q
    ||||||||||||||||||||| ||||||||||||||    
T  11164306 tcacaaaagttgtatcaaatagttgttcaaatatca 11164271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 36435822 - 36435860
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatcatta 78  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  36435822 tcacaaaagttgtttcaaataaatgttcaaatatcatta 36435860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 36133115 - 36133156
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    ||||||||||||||| ||||| |||||||||||||| |||||    
T  36133115 tcacaaaagttgtatgaaatagttgttcaaatatcactactc 36133156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 43650477 - 43650436
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    ||||| |||||||||||||| |||||| ||||||||||||||    
T  43650477 tcacataagttgtatcaaatgattgtttaaatatcattactc 43650436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 44287467 - 44287512
Alignment:
Q  37 ttatcacaaaagttgtatcaaataattgttcaaatatcattactca 82  Q
    |||||||||||||||||  ||||| |||||||||||||||| ||||    
T  44287467 ttatcacaaaagttgtaaaaaatagttgttcaaatatcatttctca 44287512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 39595374 - 39595459
Alignment:
Q  1 ccattgtttttgaccaatgaaaagagagnnnnnnnn--ttatcacaaaagttgtatcaaataattgttcaaatatcattactcaaa 84  Q
    ||||||||||||||||||||||||||||          || ||||||||||||||||||||  |||||||||||||||||||||||    
T  39595374 ccattgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatggttgttcaaatatcattactcaaa 39595459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 12349923 - 12349966
Alignment:
Q  37 ttatcacaaaagttgtatcaaataattgttcaaatatcattact 80  Q
    |||||||||||||||||||||||| |||||||||||||| ||||    
T  12349923 ttatcacaaaagttgtatcaaatagttgttcaaatatcactact 12349966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 2117570 - 2117529
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  2117570 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 2117529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 10232644 - 10232687
Alignment:
Q  43 caaaagttgtatcaaataattgttcaaatatcattactcaaaaa 86  Q
    |||||||||||| ||||| |||||||||||||| ||||||||||    
T  10232644 caaaagttgtataaaatagttgttcaaatatcactactcaaaaa 10232687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 4434615 - 4434649
Alignment:
Q  43 caaaagttgtatcaaataattgttcaaatatcatt 77  Q
    |||||||||||| ||||||||||||||||||||||    
T  4434615 caaaagttgtatgaaataattgttcaaatatcatt 4434649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 11306840 - 11306878
Alignment:
Q  43 caaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  11306840 caaaagttgtatcaaatagttgttcaaatatcactactc 11306878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 22402777 - 22402822
Alignment:
Q  40 tcacaaaagttgt-atcaaataattgttcaaatatcattactcaaa 84  Q
    ||||||||||||| ||||||||||| | ||||||||||||||||||    
T  22402777 tcacaaaagttgtcatcaaataattatacaaatatcattactcaaa 22402822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 42699194 - 42699231
Alignment:
Q  44 aaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  42699194 aaaagttgtatgaaatagttgttcaaatatcattactc 42699231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 16202866 - 16202906
Alignment:
Q  44 aaaagttgtatcaaataattgttcaaatatcattactcaaa 84  Q
    ||||||||||| |||| ||||||||||||||| ||||||||    
T  16202866 aaaagttgtatgaaatgattgttcaaatatcactactcaaa 16202906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 90
Target Start/End: Original strand, 36572854 - 36572882
Alignment:
Q  62 ttgttcaaatatcattactcaaaaataaa 90  Q
    |||||||||||||||||||||||||||||    
T  36572854 ttgttcaaatatcattactcaaaaataaa 36572882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 47998694 - 47998775
Alignment:
Q  1 ccattgtttttgaccaatgaaaagagagnnnnnnnn-ttatcacaaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    ||||||||||||||||||||||||| ||         ||||||||||||||||||||||| ||||||||||||||| |||||    
T  47998694 ccattgtttttgaccaatgaaaagaaagaaaaaaaagttatcacaaaagttgtatcaaatgattgttcaaatatcactactc 47998775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 30042271 - 30042316
Alignment:
Q  37 ttatcacaaaagttgtatcaaataattgttcaaatatcattactca 82  Q
    |||||| ||||||||||| ||||| |||||||||||||||||||||    
T  30042271 ttatcataaaagttgtatgaaatagttgttcaaatatcattactca 30042316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 38952827 - 38952872
Alignment:
Q  37 ttatcacaaaagttgtatcaaataattgttcaaatatcattactca 82  Q
    ||||||||||| |||||||||||||||||| |||||||| ||||||    
T  38952827 ttatcacaaaaattgtatcaaataattgtttaaatatcactactca 38952872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 42915149 - 42915108
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  42915149 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 42915108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 9096080 - 9096119
Alignment:
Q  43 caaaagttgtatcaaa-taattgttcaaatatcattactc 81  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  9096080 caaaagttgtatcaaaataattgttcaaatatcattactc 9096119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 31275246 - 31275328
Alignment:
Q  1 ccattgtttttgaccaatgaaaagagagnnnnnnnn--ttatcacaaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    ||||||||||||||||||||||||||||          || ||||||||||||||||||||  |||||||||||||| |||||    
T  31275246 ccattgtttttgaccaatgaaaagagagaaaaaagaaattgtcacaaaagttgtatcaaatggttgttcaaatatcactactc 31275328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 75
Target Start/End: Complemental strand, 36408134 - 36408099
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatca 75  Q
    ||||||||||||||||||||| ||||||||||||||    
T  36408134 tcacaaaagttgtatcaaatagttgttcaaatatca 36408099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 75
Target Start/End: Complemental strand, 36413257 - 36413222
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatca 75  Q
    ||||||||||||||||||||| ||||||||||||||    
T  36413257 tcacaaaagttgtatcaaatagttgttcaaatatca 36413222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 5234401 - 5234359
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatcattactca 82  Q
    ||||||||||||||||||||  |||||||||||||| ||||||    
T  5234401 tcacaaaagttgtatcaaatggttgttcaaatatcactactca 5234359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 28480468 - 28480422
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatcattactcaaaaa 86  Q
    |||||| |||||| ||||||| |||||||||||||| ||||||||||    
T  28480468 tcacaatagttgtctcaaatagttgttcaaatatcactactcaaaaa 28480422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 40090821 - 40090867
Alignment:
Q  37 ttatcacaaaagttgt-atcaaataattgttcaaatatcattactca 82  Q
    |||||||||||||| | ||||||||||||| ||||||||||||||||    
T  40090821 ttatcacaaaagttctcatcaaataattgtacaaatatcattactca 40090867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 30778190 - 30778153
Alignment:
Q  44 aaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  30778190 aaaagttatatcaaatagttgttcaaatatcattactc 30778153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 46173678 - 46173719
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    ||||||||||||||||||||  || |||||||||||||||||    
T  46173678 tcacaaaagttgtatcaaatggttattcaaatatcattactc 46173719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 37249047 - 37249091
Alignment:
Q  37 ttatcacaaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    ||||| |||||||||| |||||||  |||||||||||||||||||    
T  37249047 ttatctcaaaagttgtttcaaatagatgttcaaatatcattactc 37249091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 7678875 - 7678914
Alignment:
Q  42 acaaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  7678875 acaaaagttgtatcaaatagttgttcaaatatcattactc 7678914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 8142945 - 8142898
Alignment:
Q  40 tcacaaaagttgt-atcaaataattgttcaaatatcattactcaaaaa 86  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||    
T  8142945 tcacaaaagttgtcatcaaataattgttcaaatatcatcactcaaaaa 8142898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 75
Target Start/End: Complemental strand, 44672163 - 44672128
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatca 75  Q
    ||||||||||||||||||||||||||||||||||||    
T  44672163 tcacaaaagttgtatcaaataattgttcaaatatca 44672128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 9047001 - 9046959
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatcattactca 82  Q
    |||||||| |||||||||||| |||||||||||||| ||||||    
T  9047001 tcacaaaaattgtatcaaatagttgttcaaatatcactactca 9046959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 21273640 - 21273599
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    ||||||||||||||| ||||| |||||||||||||| |||||    
T  21273640 tcacaaaagttgtatgaaatagttgttcaaatatcactactc 21273599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 38578391 - 38578431
Alignment:
Q  37 ttatcacaaaagttgtatcaaataattgttcaaatatcatt 77  Q
    ||||||||||| |||||  ||||||||||||||||||||||    
T  38578391 ttatcacaaaaattgtaaaaaataattgttcaaatatcatt 38578431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 40413296 - 40413252
Alignment:
Q  37 ttatcacaaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    |||||| ||||||||||||||||  |||||||||||||| |||||    
T  40413296 ttatcataaaagttgtatcaaatggttgttcaaatatcactactc 40413252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 44558579 - 44558543
Alignment:
Q  54 tcaaataattgttcaaatatcattactcaaaaataaa 90  Q
    |||||||||||||||||||||| |||||||| |||||    
T  44558579 tcaaataattgttcaaatatcactactcaaatataaa 44558543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 32933688 - 32933723
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatca 75  Q
    ||||||||||||||||||||||||||||||||||||    
T  32933688 tcacaaaagttgtatcaaataattgttcaaatatca 32933723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 8792567 - 8792489
Alignment:
Q  2 cattgtttttgaccaatgaaaagagagnnnnnnnnttatcacaaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    ||||||||||||| |||||||||||||        || ||||||||||||||||||||  ||||||||||||||||||||    
T  8792567 cattgtttttgactaatgaaaagagagaaaaaag-ttgtcacaaaagttgtatcaaatggttgttcaaatatcattactc 8792489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 11788415 - 11788372
Alignment:
Q  43 caaaagttgtatcaaa-taattgttcaaatatcattactcaaaa 85  Q
    |||||||||||||||| || ||||||||||||||||||||||||    
T  11788415 caaaagttgtatcaaaatagttgttcaaatatcattactcaaaa 11788372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 12142025 - 12142067
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatcattactca 82  Q
    ||||||||||||||||||||  |||||||||||||| ||||||    
T  12142025 tcacaaaagttgtatcaaatggttgttcaaatatcactactca 12142067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 6353870 - 6353911
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    ||||||||||||||||||||| || ||||||||||| |||||    
T  6353870 tcacaaaagttgtatcaaatagtttttcaaatatcactactc 6353911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 10591293 - 10591338
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatcattactcaaaa 85  Q
    ||||||||||||| ||||||  |||||||||||||| |||||||||    
T  10591293 tcacaaaagttgtctcaaatggttgttcaaatatcactactcaaaa 10591338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 32428213 - 32428246
Alignment:
Q  44 aaaagttgtatcaaataattgttcaaatatcatt 77  Q
    ||||||||||||||||| ||||||||||||||||    
T  32428213 aaaagttgtatcaaatagttgttcaaatatcatt 32428246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 37351920 - 37351879
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    ||||||||||| |||||||| ||||||||||||||| |||||    
T  37351920 tcacaaaagttatatcaaatgattgttcaaatatcactactc 37351879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 43445548 - 43445589
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    |||||||| ||||||||||| ||||||||||||||| |||||    
T  43445548 tcacaaaaattgtatcaaatgattgttcaaatatcactactc 43445589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 21839061 - 21839017
Alignment:
Q  42 acaaaagttgtatcaaataattgttcaaatatcattactcaaaaa 86  Q
    |||||| |||||||||||| |||||||||||||| |||| |||||    
T  21839061 acaaaaattgtatcaaatagttgttcaaatatcactactaaaaaa 21839017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 29706044 - 29706086
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatcattactca 82  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  29706044 tcacaaaagttgtatcaaatagttgttcaaatatcactactca 29706086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 32687886 - 32687848
Alignment:
Q  43 caaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  32687886 caaaagttgtatcaaatagttgttcaaatatcattactc 32687848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 7231977 - 7231895
Alignment:
Q  1 ccattgtttttgaccaatgaaaagagagnnnnnnnn--ttatcacaaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    ||||||||||||||||||||||||||||          || ||||||||||||||||||||  |||||||||||||| |||||    
T  7231977 ccattgtttttgaccaatgaaaagagagaaaaaataaattgtcacaaaagttgtatcaaatggttgttcaaatatcactactc 7231895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 46473228 - 46473310
Alignment:
Q  1 ccattgtttttgaccaatgaaaagagagnnnnnnnn--ttatcacaaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    ||||||||||||||||||||||||||||          || ||| ||||||||||||||||  ||||||||||||||||||||    
T  46473228 ccattgtttttgaccaatgaaaagagagaaaaaagaagttgtcataaaagttgtatcaaatggttgttcaaatatcattactc 46473310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 49196837 - 49196872
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatca 75  Q
    ||||||||||| ||||||||||||||||||||||||    
T  49196837 tcacaaaagttttatcaaataattgttcaaatatca 49196872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 1031353 - 1031315
Alignment:
Q  44 aaaagttgtatcaaataattgttcaaatatcattactca 82  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  1031353 aaaagttgtaccaaataattgttcaaatatcattgctca 1031315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 11173551 - 11173632
Alignment:
Q  2 cattgtttttgaccaatgaaaagagagnnnnnnnn--ttatcacaaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    |||||||||||||||||||||||||||          || ||||||||||||||||||||  |||||||||||| |||||||    
T  11173551 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatggttgttcaaatattattactc 11173632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 16129566 - 16129513
Alignment:
Q  37 ttatcacaaaagttgtatcaaataattgttcaaatatcattactcaaaaataaa 90  Q
    |||||||||||||||||  ||||  |||||||||||||||| ||||| ||||||    
T  16129566 ttatcacaaaagttgtaaaaaatggttgttcaaatatcattcctcaataataaa 16129513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 41505532 - 41505495
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatcatt 77  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  41505532 tcacaaaagttgtaaaaaataattgttcaaatatcatt 41505495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 46953094 - 46953131
Alignment:
Q  44 aaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  46953094 aaaagttgtatcaaatagttgttcaaatatcactactc 46953131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 43149270 - 43149226
Alignment:
Q  43 caaaagttgtatcaaa-taattgttcaaatatcattactcaaaaa 86  Q
    ||||||||||| |||| || |||||||||||||||||||||||||    
T  43149270 caaaagttgtaccaaaatagttgttcaaatatcattactcaaaaa 43149226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 47723249 - 47723293
Alignment:
Q  37 ttatcacaaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    ||||||||| |||||||||| || |||||||||||||||| ||||    
T  47723249 ttatcacaagagttgtatcatatgattgttcaaatatcataactc 47723293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 49453618 - 49453659
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  49453618 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 49453659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 27687455 - 27687417
Alignment:
Q  37 ttatcacaaaagttgtatcaaataattgttcaaatatca 75  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  27687455 ttatcacaaaagttgtatcaaacagttgttcaaatatca 27687417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 33676042 - 33676088
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatcattactcaaaaa 86  Q
    ||||||||||| ||| ||||| |||||||||||||| ||||||||||    
T  33676042 tcacaaaagttttattaaatagttgttcaaatatcaatactcaaaaa 33676088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 2362510 - 2362551
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    |||||||| |||||||||||| |||||||||||||| |||||    
T  2362510 tcacaaaaattgtatcaaatagttgttcaaatatcactactc 2362551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 4638069 - 4638113
Alignment:
Q  43 caaaagttgtatcaaataattgttcaaatatcattactcaaaaat 87  Q
    |||||||||||| ||||  |||||||||||||| |||||||||||    
T  4638069 caaaagttgtatgaaatggttgttcaaatatcactactcaaaaat 4638113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 2241759 - 2241721
Alignment:
Q  37 ttatcacaaaagttgtatcaaataattgttcaaatatca 75  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  2241759 ttatcacaaaagttgtatcaaatggttgttcaaatatca 2241721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 32853074 - 32853032
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatcattactca 82  Q
    |||||||| |||||||||||| |||||||||||||| ||||||    
T  32853074 tcacaaaaattgtatcaaatagttgttcaaatatcactactca 32853032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 32253922 - 32253963
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    |||||||||||||| |||||| |||||||||||||| |||||    
T  32253922 tcacaaaagttgtaccaaatagttgttcaaatatcactactc 32253963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 7976 - 8013
Alignment:
Q  44 aaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  7976 aaaaattgtatcaaataattgttcaaatatcactactc 8013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 15119 - 15078
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    |||||||||||||| |||||| |||||||||||||| |||||    
T  15119 tcacaaaagttgtaccaaatagttgttcaaatatcactactc 15078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 18148 - 18185
Alignment:
Q  44 aaaagttgtatcaaataattgttcaaatatcattactc 81  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  18148 aaaagttgtatcaaatagttgttcaaatatcactactc 18185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 39020 - 39064
Alignment:
Q  40 tcacaaaagttgtatcaaataattgttcaaatatcattactcaaa 84  Q
    ||||||||||||| |||||||  ||||||||||||| ||||||||    
T  39020 tcacaaaagttgtttcaaatagatgttcaaatatcactactcaaa 39064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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