View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4408_low_9 (Length: 236)

Name: NF4408_low_9
Description: NF4408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4408_low_9
NF4408_low_9
[»] chr4 (8 HSPs)
chr4 (11-135)||(832123-832247)
chr4 (72-129)||(6388207-6388264)
chr4 (53-129)||(10464217-10464293)
chr4 (53-129)||(10475155-10475231)
chr4 (190-220)||(832311-832341)
chr4 (72-129)||(6372412-6372469)
chr4 (72-129)||(11971028-11971085)
chr4 (53-129)||(10482129-10482205)
[»] chr7 (1 HSPs)
chr7 (72-129)||(13416957-13417014)
[»] chr2 (2 HSPs)
chr2 (72-125)||(554443-554496)
chr2 (51-106)||(25377020-25377075)
[»] chr8 (1 HSPs)
chr8 (50-129)||(42846471-42846551)


Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 832123 - 832247
Alignment:
Q  11 cacagacacatatatacactcagctgttacaagccaattgaacttgtggttttgagggaaagtctttgtttttgtcatgattttgagaaaacccatctta 110  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  832123 cacagacacatacatacactcagctgttacaagccaattgaacttgtggttttgagggaaagtctttgtttttgtcatgattttgagaaaacccatctta 832222  T
Q  111 tgatatggcaaatgaaggagtcttg 135  Q
    |||||||||||||||||||||||||    
T  832223 tgatatggcaaatgaaggagtcttg 832247  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 6388207 - 6388264
Alignment:
Q  72 gtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatgaagga 129  Q
    |||||||||||||||||||||||||| |||| |||  | | |||||||||||||||||    
T  6388207 gtctttgtttttgtcatgattttgaggaaactcattctgttatatggcaaatgaagga 6388264  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 10464217 - 10464293
Alignment:
Q  53 cttgtggttttgagggaaagtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatgaagga 129  Q
    ||||||||||||| |||  |||||||||||||| |||||||  | || |||||| || | |||||||||||||||||    
T  10464217 cttgtggttttgatggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatgaagga 10464293  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 10475155 - 10475231
Alignment:
Q  53 cttgtggttttgagggaaagtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatgaagga 129  Q
    ||||||||||||| |||  |||||||||||||| |||||||  | || |||||| || | |||||||||||||||||    
T  10475155 cttgtggttttgatggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatgaagga 10475231  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 220
Target Start/End: Original strand, 832311 - 832341
Alignment:
Q  190 acaggcgatagagtagtgagaattggaggaa 220  Q
    |||||||||||||||||||||||||||||||    
T  832311 acaggcgatagagtagtgagaattggaggaa 832341  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 6372412 - 6372469
Alignment:
Q  72 gtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatgaagga 129  Q
    |||||||||||||| || | | |||| |||||||| |||| |||||||||||||||||    
T  6372412 gtctttgtttttgtaataactatgaggaaacccattttattatatggcaaatgaagga 6372469  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 11971085 - 11971028
Alignment:
Q  72 gtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatgaagga 129  Q
    |||||||||||| ||||||||||||  |||| ||| || | |||||||||||||||||    
T  11971085 gtctttgtttttctcatgattttgaacaaactcattttgttatatggcaaatgaagga 11971028  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 10482129 - 10482205
Alignment:
Q  53 cttgtggttttgagggaaagtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatgaagga 129  Q
    |||| |||||||| |||  ||||||||||| ||||||||| |||| ||||  || || | |||||||||||||||||    
T  10482129 cttgcggttttgatggattgtctttgttttggtcatgattatgaggaaacttattttgttatatggcaaatgaagga 10482205  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 13417014 - 13416957
Alignment:
Q  72 gtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatgaagga 129  Q
    |||||||||||| | |||||||| |||||||| || |||| |||||||||||||||||    
T  13417014 gtctttgtttttcttatgattttaagaaaacctattttatcatatggcaaatgaagga 13416957  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 554443 - 554496
Alignment:
Q  72 gtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatga 125  Q
    |||||||||||| ||| |||||||||  |||||||||||| |||||||||||||    
T  554443 gtctttgtttttctcacgattttgagggaacccatcttattatatggcaaatga 554496  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 25377020 - 25377075
Alignment:
Q  51 aacttgtggttttgagggaaagtctttgtttttgtcatgattttgagaaaacccat 106  Q
    ||||||||||||||| |||  |||||||||||||||||||||| ||| ||| ||||    
T  25377020 aacttgtggttttgacggactgtctttgtttttgtcatgatttggaggaaaaccat 25377075  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 129
Target Start/End: Complemental strand, 42846551 - 42846471
Alignment:
Q  50 gaacttgtggttttgagggaaagtctttgtttttgt-catgattttgagaaaacccatcttatgatatggcaaatgaagga 129  Q
    |||||||||||||||||||| | ||||  ||||| | |||||||||||| |||||||| || | || ||||||||||||||    
T  42846551 gaacttgtggttttgagggacactcttaattttttttcatgattttgaggaaacccattttgttatttggcaaatgaagga 42846471  T

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