View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4410-Insertion-1 (Length: 949)

Name: NF4410-Insertion-1
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4410-Insertion-1
NF4410-Insertion-1
[»] chr7 (5 HSPs)
chr7 (64-371)||(45937624-45937931)
chr7 (380-526)||(45937963-45938112)
chr7 (216-371)||(297012-297167)
chr7 (216-371)||(293118-293274)
chr7 (270-367)||(22582380-22582480)
[»] chr8 (7 HSPs)
chr8 (216-371)||(37186829-37186984)
chr8 (210-290)||(37786745-37786825)
chr8 (268-371)||(37791193-37791295)
chr8 (210-290)||(37791301-37791381)
chr8 (268-371)||(37786622-37786725)
chr8 (283-371)||(11096134-11096220)
chr8 (445-526)||(37790983-37791063)
[»] chr4 (9 HSPs)
chr4 (398-527)||(5715442-5715575)
chr4 (436-526)||(5725716-5725805)
chr4 (210-290)||(5707100-5707180)
chr4 (268-370)||(53011149-53011251)
chr4 (268-371)||(53008257-53008360)
chr4 (268-345)||(56563179-56563256)
chr4 (216-263)||(50911747-50911794)
chr4 (216-263)||(50935544-50935591)
chr4 (310-371)||(5715325-5715386)
[»] chr3 (8 HSPs)
chr3 (209-370)||(28920312-28920473)
chr3 (436-526)||(18649486-18649575)
chr3 (268-371)||(4315552-4315655)
chr3 (210-290)||(18641093-18641173)
chr3 (284-371)||(531568-531655)
chr3 (283-371)||(32813593-32813681)
chr3 (283-336)||(55418423-55418476)
chr3 (445-524)||(41925118-41925196)
[»] chr2 (15 HSPs)
chr2 (436-526)||(29960509-29960601)
chr2 (210-290)||(302270-302350)
chr2 (268-371)||(21794528-21794631)
chr2 (268-371)||(45485826-45485929)
chr2 (210-288)||(29960258-29960336)
chr2 (270-371)||(302372-302473)
chr2 (268-371)||(295734-295837)
chr2 (268-371)||(18163923-18164026)
chr2 (268-371)||(43081675-43081778)
chr2 (270-357)||(29960346-29960433)
chr2 (216-371)||(39190688-39190843)
chr2 (216-279)||(295654-295717)
chr2 (445-526)||(295921-296000)
chr2 (447-526)||(302558-302636)
chr2 (268-357)||(13273295-13273380)
[»] chr1 (2 HSPs)
chr1 (210-293)||(44541492-44541575)
chr1 (318-371)||(44541400-44541453)
[»] scaffold0038 (3 HSPs)
scaffold0038 (244-371)||(49344-49474)
scaffold0038 (401-491)||(49537-49628)
scaffold0038 (218-293)||(49262-49337)
[»] chr6 (5 HSPs)
chr6 (244-371)||(28249182-28249312)
chr6 (401-491)||(28249375-28249466)
chr6 (283-371)||(7501407-7501495)
chr6 (218-293)||(28249100-28249175)
chr6 (268-371)||(31888483-31888586)
[»] chr5 (6 HSPs)
chr5 (271-371)||(9507626-9507726)
chr5 (270-371)||(34854045-34854146)
chr5 (210-286)||(689961-690036)
chr5 (271-371)||(32090199-32090299)
chr5 (268-371)||(9503641-9503744)
chr5 (445-526)||(690202-690282)


Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 64 - 371
Target Start/End: Original strand, 45937624 - 45937931
Alignment:
Q  64 ttaccttttgaggtctaccagaattttgttcccctaattaagttcattttcaatgatgcaaggaaattaccactacatggtatgagttttagactagtat 163  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45937624 ttaccttttgacatctaccagaattttgttcacctaattaagttcattttcaatgatgcaaggaaattaccactacatggtatgagttttagactagtat 45937723  T
Q  164 ctgaataccaaaaatagataaaactaacgattttacataaattacatattgcaatattaatcaataactgttgtacagaatctggagtgcagcttttgaa 263  Q
    || ||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||| ||||||||    
T  45937724 ctaaatactaaaaatagataaaactaacgattttacataaattacatattagaatattaatcaataactgttgttcagaatctggagtgcaacttttgaa 45937823  T
Q  264 catgagcttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggag 363  Q
    |||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||| ||| ||||||| |||||||| |||||||||||||||||    
T  45937824 catgagcttctgaagtgcagcttttgatgtcttcaaaagcagggtctagtaataaaccttggttagcgtgttaaccaaggtagttagttagttagaggag 45937923  T
Q  364 tttgttac 371  Q
    ||||||||    
T  45937924 tttgttac 45937931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 380 - 526
Target Start/End: Original strand, 45937963 - 45938112
Alignment:
Q  380 tgtaaataagtatcaacgatcaataaaaattcattagttttctctcttcagtttttacaac---tttgtgttattttcatcttgcttagaaacaacttat 476  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||| |||||    
T  45937963 tgtaaataagtatcaacgatcaataaaaattcattagttttctctcttcagtttttacaacaactttatgttattttcatcttgcttagaaacatcttat 45938062  T
Q  477 ttttcataaacacttccgctgtgcatagaacatagtgaattgttctaaca 526  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  45938063 ttttcataagcacttccgctgtgcatagaacatagggaattgttctaaca 45938112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 216 - 371
Target Start/End: Original strand, 297012 - 297167
Alignment:
Q  216 aatattaatcaataactgttgtacagaatctggagtgcagcttttgaacatgagcttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaa 315  Q
    |||||||||||||||||||||| |||  |||| |||| ||||| ||||||| | ||||||| |||| |||||||||||||||| || | | |||||||||    
T  297012 aatattaatcaataactgttgttcagcttctgaagtgtagcttctgaacatcaacttctgatgtgcagcttctgatgtcttcagaaactgagtttagtaa 297111  T
Q  316 taaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac 371  Q
     |||||||| ||| ||||||| |||||||| |||||| ||||||||||||||||||    
T  297112 caaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttac 297167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 216 - 371
Target Start/End: Original strand, 293118 - 293274
Alignment:
Q  216 aatattaatcaataactgttgtacagaatctggagtgcagcttttgaacatga-gcttctgaagtgcggcttctgatgtcttcaaaagcagggtttagta 314  Q
    |||||||||||||||||||||| |||  |||| |||||||||| |||||| || |||| ||| |||  |||| ||||||||||| || | | ||||||||    
T  293118 aatattaatcaataactgttgttcagcttctgaagtgcagcttctgaacaagaagcttttgatgtgtagcttttgatgtcttcagaaactgagtttagta 293217  T
Q  315 ataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac 371  Q
    | |||| ||| ||| ||||||| |||||||| |||||| |||||||| |||||||||    
T  293218 acaaacattggttagcgtgttaaccaaggtagttagtttgttagaggggtttgttac 293274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 270 - 367
Target Start/End: Complemental strand, 22582480 - 22582380
Alignment:
Q  270 cttctgaagtgcggcttctgatgtcttcaaaagcagg---gtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagttt 366  Q
    |||||||||| |  ||||||||||||||||||||||    || ||||||||||||||| ||| ||||||| |||||||| |||||| |||||||||||||    
T  22582480 cttctgaagtacaacttctgatgtcttcaaaagcagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagttt 22582381  T
Q  367 g 367  Q
    |    
T  22582380 g 22582380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 2e-39; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 216 - 371
Target Start/End: Complemental strand, 37186984 - 37186829
Alignment:
Q  216 aatattaatcaataactgttgtacagaatctggagtgcagcttttgaacatgagcttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaa 315  Q
    ||||||||||||||| |||||| ||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||| | |||||| || ||||||    
T  37186984 aatattaatcaataattgttgttcagaatctgaagtgcagcttctgaacatgagcttctgaagtgcagcttctgatgtctttagaagcagagtctagtaa 37186885  T
Q  316 taaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac 371  Q
    ||||| |||  ||  |||||| ||| |||| |||||| ||||||||||||||||||    
T  37186884 taaacattggctatagtgttaaccagggtagttagtttgttagaggagtttgttac 37186829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 210 - 290
Target Start/End: Complemental strand, 37786825 - 37786745
Alignment:
Q  210 tattgcaatattaatcaataactgttgtacagaatctggagtgcagcttttgaacatgagcttctgaagtgcggcttctga 290  Q
    ||||| ||||||||||||||||||||||  |||||||| |||||||||| |||||||||||||||||||||  ||||||||    
T  37786825 tattggaatattaatcaataactgttgtttagaatctgaagtgcagcttctgaacatgagcttctgaagtgatgcttctga 37786745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 268 - 371
Target Start/End: Complemental strand, 37791295 - 37791193
Alignment:
Q  268 agcttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 367  Q
    ||||||||| |||| |||||||||||||||| |||||| ||| |||||  ||||||||||| | ||||| |||||||| |||||| ||||||||||||||    
T  37791295 agcttctgatgtgcagcttctgatgtcttcagaagcagagtt-agtaaccaaccttgattagcatgttaaccaaggtagttagtttgttagaggagtttg 37791197  T
Q  368 ttac 371  Q
    ||||    
T  37791196 ttac 37791193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 210 - 290
Target Start/End: Complemental strand, 37791381 - 37791301
Alignment:
Q  210 tattgcaatattaatcaataactgttgtacagaatctggagtgcagcttttgaacatgagcttctgaagtgcggcttctga 290  Q
    ||||| |||||||||||||||||||||| |||||| || |||||| ||| |||||||||||||||||||||| | ||||||    
T  37791381 tattggaatattaatcaataactgttgttcagaatatgaagtgcaacttctgaacatgagcttctgaagtgctgtttctga 37791301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 268 - 371
Target Start/End: Complemental strand, 37786725 - 37786622
Alignment:
Q  268 agcttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 367  Q
    ||||||||| |||| |||| ||||||||||| |||||| || ||||||  ||||||| ||| ||||||| ||| |||| |||||| ||||||||| ||||    
T  37786725 agcttctgatgtgcagcttttgatgtcttcataagcagagtctagtaaccaaccttggttagcgtgttaaccagggtagttagtttgttagaggactttg 37786626  T
Q  368 ttac 371  Q
    ||||    
T  37786625 ttac 37786622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 371
Target Start/End: Original strand, 11096134 - 11096220
Alignment:
Q  283 gcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac 371  Q
    |||||||||||||||| ||| ||  | |||||| |||| ||| ||| |||||||  ||||||| |||||| ||||||||||||||||||    
T  11096134 gcttctgatgtcttcagaaggag--tctagtaacaaactttggttagcgtgttaatcaaggtagttagtttgttagaggagtttgttac 11096220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 445 - 526
Target Start/End: Complemental strand, 37791063 - 37790983
Alignment:
Q  445 tgttattttcatcttgcttagaaacaacttatttttcataaacac-ttccgctgtgcatagaacatagtgaattgttctaaca 526  Q
    ||||||||||||||||||   ||||| ||||||||| |||| ||| |||||||| ||||||||||||| | ||||||||||||    
T  37791063 tgttattttcatcttgctcttaaacagcttattttt-ataagcactttccgctgcgcatagaacatagcg-attgttctaaca 37790983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 3e-38; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 398 - 527
Target Start/End: Original strand, 5715442 - 5715575
Alignment:
Q  398 atcaataaaaattcattagttttc--tctcttcagtttttacaac---tttgtgttattttcatcttgcttagaaacaacttatttttcataaacacttc 492  Q
    |||||||||||||||||||||||   |||||||||||||||||||   ||| |||||||| |||||||||||||||||||||||||||||||| |||||     
T  5715442 atcaataaaaattcattagtttttcttctcttcagtttttacaacaactttatgttattt-catcttgcttagaaacaacttatttttcataagcacttt 5715540  T
Q  493 cgctgtgcatagaacatagtgaattgttctaacat 527  Q
    | |||||||||||||||||||||||||||||||||    
T  5715541 cactgtgcatagaacatagtgaattgttctaacat 5715575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 436 - 526
Target Start/End: Complemental strand, 5725805 - 5725716
Alignment:
Q  436 acaactttgtgttattttcatcttgcttagaaacaacttatttttcataaacacttccgctgtgcatagaacatagtgaattgttctaaca 526  Q
    |||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||    
T  5725805 acaactttatgttattt-catcttgcttagaaacaacttattttttataagcacttctgctgtgcatagaacatagtgaattgttctaaca 5725716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 210 - 290
Target Start/End: Original strand, 5707100 - 5707180
Alignment:
Q  210 tattgcaatattaatcaataactgttgtacagaatctggagtgcagcttttgaacatgagcttctgaagtgcggcttctga 290  Q
    ||||| ||||||||||||||| |||||| ||||||||| |||| ||||| ||||||||||||||||||| || ||||||||    
T  5707100 tattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctga 5707180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 268 - 370
Target Start/End: Original strand, 53011149 - 53011251
Alignment:
Q  268 agcttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 367  Q
    ||||||||| |||| |||| ||||||||||| |||||| || |||||| |||| ||| ||| ||||||| |||||||| |||||| ||||||||| ||||    
T  53011149 agcttctgatgtgcagcttatgatgtcttcagaagcagagtctagtaacaaacattggttagcgtgttaaccaaggtagttagtttgttagaggattttg 53011248  T
Q  368 tta 370  Q
    |||    
T  53011249 tta 53011251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 53008257 - 53008360
Alignment:
Q  268 agcttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 367  Q
    |||||||||||| | |||||||||||||||| |||||| || |||||| |||| ||| ||| ||| ||| ||||  || |||||| ||||||||||||||    
T  53008257 agcttctgaagtacagcttctgatgtcttcagaagcagagtctagtaacaaacattggttagcgtattaaccaaactagttagtttgttagaggagtttg 53008356  T
Q  368 ttac 371  Q
    ||||    
T  53008357 ttac 53008360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 56563179 - 56563256
Alignment:
Q  268 agcttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggta 345  Q
    ||||| |||||||| |||||||||||||||| |||||| || || ||| |||||||| ||| ||||||| ||||||||    
T  56563179 agcttatgaagtgcagcttctgatgtcttcagaagcagagtctactaacaaaccttggttagcgtgttaaccaaggta 56563256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 50911747 - 50911794
Alignment:
Q  216 aatattaatcaataactgttgtacagaatctggagtgcagcttttgaa 263  Q
    |||||||||||||||||||||| ||||| |||||||||||||| ||||    
T  50911747 aatattaatcaataactgttgttcagaagctggagtgcagcttctgaa 50911794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 50935544 - 50935591
Alignment:
Q  216 aatattaatcaataactgttgtacagaatctggagtgcagcttttgaa 263  Q
    |||||||||||||||||||||| ||||| |||||||||| ||| ||||    
T  50935544 aatattaatcaataactgttgttcagaagctggagtgcaacttctgaa 50935591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 310 - 371
Target Start/End: Original strand, 5715325 - 5715386
Alignment:
Q  310 tagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac 371  Q
    |||||| |||||||| ||| ||||||| |||   ||||||||| ||||||||||||||||||    
T  5715325 tagtaacaaaccttggttagcgtgttaaccagaataattagtttgttagaggagtttgttac 5715386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 5e-31; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 209 - 370
Target Start/End: Complemental strand, 28920473 - 28920312
Alignment:
Q  209 atattgcaatattaatcaataactgttgtacagaatctggagtgcagcttttgaacatgagcttctgaagtgcggcttctgatgtcttcaaaagcagggt 308  Q
    |||||| ||||||||||||||| | |||| ||||||||| |||||||||| |||||||||| |||| |||||| |||||||||||||||| |||||  ||    
T  28920473 atattggaatattaatcaataattattgttcagaatctgaagtgcagcttctgaacatgagtttctaaagtgcagcttctgatgtcttcagaagcatagt 28920374  T
Q  309 ttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgtta 370  Q
     ||||||| || |||| ||| | ||||| ||| |||| ||||||  ||||||||||||||||    
T  28920373 ctagtaatcaatcttggttagcatgttaaccagggtagttagtttattagaggagtttgtta 28920312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 436 - 526
Target Start/End: Complemental strand, 18649575 - 18649486
Alignment:
Q  436 acaactttgtgttattttcatcttgcttagaaacaacttatttttcataaacacttccgctgtgcatagaacatagtgaattgttctaaca 526  Q
    |||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||    
T  18649575 acaactttatgttattt-catcttgcttagaaacaacttattttttataagcacttctgctgtgcatagaacatagtgaattgttctaaca 18649486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 4315552 - 4315655
Alignment:
Q  268 agcttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 367  Q
    |||||||||||||| |||||||||| ||||| |||||| || |||||| |||| ||| ||| ||||||| |||||||| |||||| ||||||||||||||    
T  4315552 agcttctgaagtgcagcttctgatggcttcagaagcagagtctagtaacaaacgttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 4315651  T
Q  368 ttac 371  Q
    ||||    
T  4315652 ttac 4315655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 210 - 290
Target Start/End: Complemental strand, 18641173 - 18641093
Alignment:
Q  210 tattgcaatattaatcaataactgttgtacagaatctggagtgcagcttttgaacatgagcttctgaagtgcggcttctga 290  Q
    ||||| ||||||||||||||| |||||| ||||||||| |||| ||||| ||||||||||||||||||| || ||||||||    
T  18641173 tattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctga 18641093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 284 - 371
Target Start/End: Complemental strand, 531655 - 531568
Alignment:
Q  284 cttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac 371  Q
    ||||||||||||||| |||||| || ||||||||||||||| ||| ||||||| | |||||| ||||||  |||||||||||||||||    
T  531655 cttctgatgtcttcagaagcagagtctagtaataaaccttggttagcgtgttaacaaaggtagttagttttttagaggagtttgttac 531568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 283 - 371
Target Start/End: Original strand, 32813593 - 32813681
Alignment:
Q  283 gcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac 371  Q
    |||| ||||||||| | ||||||  | |||||| |||||||| ||| ||||||| | |||||| |||||| ||||||||||||||||||    
T  32813593 gcttttgatgtctttagaagcagaatctagtaacaaaccttggttagcgtgttaacgaaggtagttagtttgttagaggagtttgttac 32813681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 336
Target Start/End: Original strand, 55418423 - 55418476
Alignment:
Q  283 gcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgtta 336  Q
    |||||||||||||||| |||||| || ||||||||||||||| ||| |||||||    
T  55418423 gcttctgatgtcttcagaagcagagtctagtaataaaccttggttagcgtgtta 55418476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 445 - 524
Target Start/End: Complemental strand, 41925196 - 41925118
Alignment:
Q  445 tgttattttcatcttgcttagaaacaacttatttttcataaacac-ttccgctgtgcatagaacatagtgaattgttctaa 524  Q
    ||||||||||||||||||   ||||||||||||||| |||| ||| |||||||| ||||||||||||| | ||||||||||    
T  41925196 tgttattttcatcttgctcttaaacaacttattttt-ataagcactttccgctgcgcatagaacatagcg-attgttctaa 41925118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 5e-31; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 436 - 526
Target Start/End: Original strand, 29960509 - 29960601
Alignment:
Q  436 acaactttgtgttattttcatcttgct--tagaaacaacttatttttcataaacacttccgctgtgcatagaacatagtgaattgttctaaca 526  Q
    |||||||| ||||||||||||||||||  |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29960509 acaactttttgttattttcatcttgctcttagaaataacttatttttcataagcacttccgctgtgcatagaacatagtgaattgttctaaca 29960601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 210 - 290
Target Start/End: Original strand, 302270 - 302350
Alignment:
Q  210 tattgcaatattaatcaataactgttgtacagaatctggagtgcagcttttgaacatgagcttctgaagtgcggcttctga 290  Q
    ||||| ||||| |||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||| ||||||||    
T  302270 tattggaatatgaatcaataactgttgttcagaatctgaagtgcagcttctgaacatgagcttctgaagtgctgcttctga 302350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 268 - 371
Target Start/End: Complemental strand, 21794631 - 21794528
Alignment:
Q  268 agcttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 367  Q
    ||||||||| |||| |||||||||||||||| |||||| || |||||| ||||| || ||| ||||||| |||||||| |||||| ||||||||||||||    
T  21794631 agcttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaacaaaccatggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 21794532  T
Q  368 ttac 371  Q
    ||||    
T  21794531 ttac 21794528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 268 - 371
Target Start/End: Complemental strand, 45485929 - 45485826
Alignment:
Q  268 agcttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 367  Q
    |||||||||||||| |||||||||||||||| || ||| || ||| || |||||||| ||| ||||||| |||||||| |||||| ||||||||||||||    
T  45485929 agcttctgaagtgcagcttctgatgtcttcagaaacagagtctagcaacaaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 45485830  T
Q  368 ttac 371  Q
    ||||    
T  45485829 ttac 45485826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 29960258 - 29960336
Alignment:
Q  210 tattgcaatattaatcaataactgttgtacagaatctggagtgcagcttttgaacatgagcttctgaagtgcggcttct 288  Q
    ||||| ||||||||||||||||||||||  ||||| ||||||||||||| |||||||||||||||||||||| ||||||    
T  29960258 tattggaatattaatcaataactgttgtttagaatttggagtgcagcttctgaacatgagcttctgaagtgctgcttct 29960336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 270 - 371
Target Start/End: Original strand, 302372 - 302473
Alignment:
Q  270 cttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgtt 369  Q
    ||||||| |||| |||||||||||||||| |||||| || ||||||  ||||||| ||| ||||||| ||| |||| |||||| ||||||||||||||||    
T  302372 cttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaaccaaccttggttagcgtgttaaccagggtagttagtttgttagaggagtttgtt 302471  T
Q  370 ac 371  Q
    ||    
T  302472 ac 302473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 295734 - 295837
Alignment:
Q  268 agcttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 367  Q
    ||||||||| |||| |||||||||||||||| |||||| || ||||||  |||||||||||  |||||| ||| | || |||||| ||||||||||||||    
T  295734 agcttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaaccaaccttgattagtgtgttaaccaggatagttagtttgttagaggagtttg 295833  T
Q  368 ttac 371  Q
    ||||    
T  295834 ttac 295837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 18163923 - 18164026
Alignment:
Q  268 agcttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 367  Q
    |||||||||| ||| |||||||||||||| | ||| || || ||||||||| | ||| ||| ||||||| |||||||| |||||| ||||||||||||||    
T  18163923 agcttctgaaatgctgcttctgatgtctttagaagtagagtctagtaataaccattggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 18164022  T
Q  368 ttac 371  Q
    ||||    
T  18164023 ttac 18164026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 268 - 371
Target Start/End: Complemental strand, 43081778 - 43081675
Alignment:
Q  268 agcttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 367  Q
    ||||||||| |||| |||||||||||||||| |||||| || ||||||||||| ||| ||| | ||||| | |||||| |||||| |||| |||||||||    
T  43081778 agcttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaataaacattggttagcatgttaacgaaggtagttagtttgttataggagtttg 43081679  T
Q  368 ttac 371  Q
    ||||    
T  43081678 ttac 43081675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 357
Target Start/End: Original strand, 29960346 - 29960433
Alignment:
Q  270 cttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagtta 357  Q
    ||||||||| || |||| ||||||||||| ||||||||| |||||| |||||||| ||| ||||||| |||||||| |||||| ||||    
T  29960346 cttctgaagggcagcttatgatgtcttcagaagcagggtctagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgtta 29960433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 371
Target Start/End: Complemental strand, 39190843 - 39190688
Alignment:
Q  216 aatattaatcaataactgttgtacagaatctggagtgcagcttttgaacatgagcttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaa 315  Q
    |||||||||||||||||||||  |||| |||  |||||||| | || |||| ||  |||||||||| || ||||| |||||||| | |   || ||||||    
T  39190843 aatattaatcaataactgttgctcagactcttaagtgcagcctctggacatcagactctgaagtgcagcgtctgaagtcttcaacatctaagtctagtaa 39190744  T
Q  316 taaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac 371  Q
     |||| ||| ||| | ||||| |||||||| |||||| ||||||||||||||||||    
T  39190743 caaactttggttagcatgttaaccaaggtagttagtttgttagaggagtttgttac 39190688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 216 - 279
Target Start/End: Original strand, 295654 - 295717
Alignment:
Q  216 aatattaatcaataactgttgtacagaatctggagtgcagcttttgaacatgagcttctgaagt 279  Q
    |||||||||| |||||||||||  ||||| || |||||||||| ||||||||||||||||||||    
T  295654 aatattaatcgataactgttgtttagaatttgaagtgcagcttctgaacatgagcttctgaagt 295717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 445 - 526
Target Start/End: Original strand, 295921 - 296000
Alignment:
Q  445 tgttattttcatcttgcttagaaacaacttatttttcataaacac-ttccgctgtgcatagaacatagtgaattgttctaaca 526  Q
    ||||||||||||||||||   ||||||||||||||  |||| ||| |||||||||||||||||||||| | ||||||||||||    
T  295921 tgttattttcatcttgctcttaaacaacttatttt--ataagcactttccgctgtgcatagaacatagcg-attgttctaaca 296000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 447 - 526
Target Start/End: Original strand, 302558 - 302636
Alignment:
Q  447 ttattttcatcttgcttagaaacaacttatttttcataaacac-ttccgctgtgcatagaacatagtgaattgttctaaca 526  Q
    |||||||||||||||| | ||||| ||||||||| |||| ||| |||||||| ||||||||||||| | ||||||||||||    
T  302558 ttattttcatcttgctcataaacatcttattttt-ataagcactttccgctgcgcatagaacatagcg-attgttctaaca 302636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 268 - 357
Target Start/End: Original strand, 13273295 - 13273380
Alignment:
Q  268 agcttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagtta 357  Q
    |||||||||||||| ||||||    |||||| |||||| || |||||| |||||||| ||| ||||||| |||||||| |||||| ||||    
T  13273295 agcttctgaagtgcagcttct----tcttcagaagcagagtctagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgtta 13273380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 210 - 293
Target Start/End: Complemental strand, 44541575 - 44541492
Alignment:
Q  210 tattgcaatattaatcaataactgttgtacagaatctggagtgcagcttttgaacatgagcttctgaagtgcggcttctgatgt 293  Q
    ||||| ||||||||||||||| |||||| ||||||||| |||||||||| |||||||||||||||||||||| |||||||||||    
T  44541575 tattggaatattaatcaataattgttgttcagaatctgaagtgcagcttctgaacatgagcttctgaagtgctgcttctgatgt 44541492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 371
Target Start/End: Complemental strand, 44541453 - 44541400
Alignment:
Q  318 aaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac 371  Q
    |||||||||||  |||||| ||| |||| |||||| ||||||||||||||||||    
T  44541453 aaccttgattagtgtgttaaccagggtagttagtttgttagaggagtttgttac 44541400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 57; Significance: 3e-23; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 244 - 371
Target Start/End: Original strand, 49344 - 49474
Alignment:
Q  244 tctggagtgcagcttttgaacatgag---cttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagcca 340  Q
    |||| |||||||||| ||||||| ||   ||||| | |||| |||||||||||||||| ||||||||| |||||| |||||||| ||| ||||||| |||    
T  49344 tctgaagtgcagcttctgaacatcagaaacttctaatgtgctgcttctgatgtcttcagaagcagggtctagtaacaaaccttggttagcgtgttaacca 49443  T
Q  341 aggtaattagttagttagaggagtttgttac 371  Q
    ||||| |||||| ||||||| ||||||||||    
T  49444 aggtagttagtttgttagagaagtttgttac 49474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 401 - 491
Target Start/End: Original strand, 49537 - 49628
Alignment:
Q  401 aataaaaattcattagttttctctcttcagtttt--tacaactttgtgttattttcatcttgcttagaaacaacttatttttcataaacactt 491  Q
    ||||||||||||||||||||||||||||||||||   | |||||| ||||| |||||||||||||||||||| |||||||||||||| |||||    
T  49537 aataaaaattcattagttttctctcttcagttttacaataactttatgtta-tttcatcttgcttagaaacagcttatttttcataagcactt 49628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 218 - 293
Target Start/End: Original strand, 49262 - 49337
Alignment:
Q  218 tattaatcaataactgttgtacagaatctggagtgcagcttttgaacatgagcttctgaagtgcggcttctgatgt 293  Q
    |||||||||||||||||||| ||||||||| ||||||||||  |||||||||||||||||||   |||||||||||    
T  49262 tattaatcaataactgttgttcagaatctgaagtgcagcttcggaacatgagcttctgaagtatagcttctgatgt 49337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 3e-23; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 244 - 371
Target Start/End: Original strand, 28249182 - 28249312
Alignment:
Q  244 tctggagtgcagcttttgaacatgag---cttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagcca 340  Q
    |||| |||||||||| ||||||| ||   ||||| | |||| |||||||||||||||| ||||||||| |||||| |||||||| ||| ||||||| |||    
T  28249182 tctgaagtgcagcttctgaacatcagaaacttctaatgtgctgcttctgatgtcttcagaagcagggtctagtaacaaaccttggttagcgtgttaacca 28249281  T
Q  341 aggtaattagttagttagaggagtttgttac 371  Q
    ||||| |||||| ||||||| ||||||||||    
T  28249282 aggtagttagtttgttagagaagtttgttac 28249312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 401 - 491
Target Start/End: Original strand, 28249375 - 28249466
Alignment:
Q  401 aataaaaattcattagttttctctcttcagtttt--tacaactttgtgttattttcatcttgcttagaaacaacttatttttcataaacactt 491  Q
    ||||||||||||||||||||||||||||||||||   | |||||| ||||| |||||||||||||||||||| |||||||||||||| |||||    
T  28249375 aataaaaattcattagttttctctcttcagttttacaataactttatgtta-tttcatcttgcttagaaacagcttatttttcataagcactt 28249466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 283 - 371
Target Start/End: Complemental strand, 7501495 - 7501407
Alignment:
Q  283 gcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac 371  Q
    |||||||||||||||| |||||| || |||||| |||||||| ||| ||||||| ||||| || |||||| ||||||||||||||||||    
T  7501495 gcttctgatgtcttcacaagcagagtctagtaacaaaccttggttagcgtgttaaccaagatagttagtttgttagaggagtttgttac 7501407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 218 - 293
Target Start/End: Original strand, 28249100 - 28249175
Alignment:
Q  218 tattaatcaataactgttgtacagaatctggagtgcagcttttgaacatgagcttctgaagtgcggcttctgatgt 293  Q
    |||||||||||||||||||| ||||||||| ||||||||||  |||||||||||||||||||   |||||||||||    
T  28249100 tattaatcaataactgttgttcagaatctgaagtgcagcttcggaacatgagcttctgaagtatagcttctgatgt 28249175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 31888483 - 31888586
Alignment:
Q  268 agcttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 367  Q
    ||||||| |||||| |||||||||||||||| |||||  || |||||| |||||||| ||| ||||||| | |||||| |||||| ||||||| ||||||    
T  31888483 agcttctaaagtgcagcttctgatgtcttcagaagcatagtctagtaacaaaccttggttagcgtgttaactaaggtagttagtttgttagagaagtttg 31888582  T
Q  368 ttac 371  Q
    ||||    
T  31888583 ttac 31888586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 6e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 271 - 371
Target Start/End: Original strand, 9507626 - 9507726
Alignment:
Q  271 ttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgtta 370  Q
    ||||||||| |  ||||||||||||||| |||||| || ||||||||||||||| ||| ||||||| |||||||| |||||| |||| ||||||||||||    
T  9507626 ttctgaagtacaacttctgatgtcttcagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttaaaggagtttgtta 9507725  T
Q  371 c 371  Q
    |    
T  9507726 c 9507726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 270 - 371
Target Start/End: Original strand, 34854045 - 34854146
Alignment:
Q  270 cttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgtt 369  Q
    ||||||| |||| |||| ||||||||||| |||||| || ||||||||||| ||| ||| ||||||| |||||||| ||| || ||||||||||||||||    
T  34854045 cttctgatgtgcagcttttgatgtcttcagaagcagagtctagtaataaactttggttagcgtgttaaccaaggtagttaatttgttagaggagtttgtt 34854144  T
Q  370 ac 371  Q
    ||    
T  34854145 ac 34854146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 210 - 286
Target Start/End: Original strand, 689961 - 690036
Alignment:
Q  210 tattgcaatattaatcaataactgttgtacagaatctggagtgcagcttttgaacatgagcttctgaagtgcggctt 286  Q
    ||||| |||||||||||||||||||||| ||||||||| |||||||| || ||||||||||||||||||||| ||||    
T  689961 tattggaatattaatcaataactgttgttcagaatctgaagtgcagc-ttcgaacatgagcttctgaagtgctgctt 690036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 271 - 371
Target Start/End: Original strand, 32090199 - 32090299
Alignment:
Q  271 ttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgtta 370  Q
    ||||||||| | |||||||||||||||| ||| ||  | |||||| |||||| | ||| ||||||| |||| ||| |||||| |||||||||||||||||    
T  32090199 ttctgaagtacagcttctgatgtcttcagaagtagaatctagtaacaaacctcggttagcgtgttaaccaatgtagttagtttgttagaggagtttgtta 32090298  T
Q  371 c 371  Q
    |    
T  32090299 c 32090299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 9503641 - 9503744
Alignment:
Q  268 agcttctgaagtgcggcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 367  Q
    |||||||||||| |   |||||| ||||||| |||||| || ||||||||||| ||| ||| |||||||  |||| || |||||| ||||||||||||||    
T  9503641 agcttctgaagtacaatttctgaagtcttcagaagcagagtctagtaataaactttggttagcgtgttaatcaagatagttagtttgttagaggagtttg 9503740  T
Q  368 ttac 371  Q
    ||||    
T  9503741 ttac 9503744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 445 - 526
Target Start/End: Original strand, 690202 - 690282
Alignment:
Q  445 tgttattttcatcttgcttagaaacaacttatttttcataaacac-ttccgctgtgcatagaacatagtgaattgttctaaca 526  Q
    ||||||||||||||| |||  ||||||||||| ||| |||| ||| |||||||| ||||||||||||| | ||||||||||||    
T  690202 tgttattttcatcttacttttaaacaacttatattt-ataagcactttccgctgcgcatagaacatagcg-attgttctaaca 690282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University