View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4411-Insertion-10 (Length: 271)

Name: NF4411-Insertion-10
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4411-Insertion-10
NF4411-Insertion-10
[»] chr8 (3 HSPs)
chr8 (110-271)||(44164642-44164804)
chr8 (143-271)||(17724585-17724714)
chr8 (110-266)||(41061512-41061669)
[»] chr4 (2 HSPs)
chr4 (109-267)||(22209426-22209584)
chr4 (110-178)||(42935613-42935681)
[»] chr3 (2 HSPs)
chr3 (109-271)||(33813240-33813401)
chr3 (202-271)||(45730512-45730581)
[»] scaffold0013 (1 HSPs)
scaffold0013 (131-266)||(44251-44387)
[»] chr2 (4 HSPs)
chr2 (131-271)||(11502433-11502575)
chr2 (197-271)||(6095880-6095954)
chr2 (110-263)||(8207637-8207795)
chr2 (202-266)||(17909636-17909700)
[»] chr1 (3 HSPs)
chr1 (110-271)||(10484507-10484670)
chr1 (197-271)||(19251541-19251615)
chr1 (131-232)||(25164761-25164864)
[»] chr5 (1 HSPs)
chr5 (131-267)||(5586003-5586141)
[»] chr6 (1 HSPs)
chr6 (110-268)||(3621982-3622141)


Alignment Details
Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 110 - 271
Target Start/End: Original strand, 44164642 - 44164804
Alignment:
Q  110 ttttaccactggatcattaatatttttattgaaatattgttgcttctaaaatggatatctaatcctaaatgccnnnnnnnaagc-actaacactcatttt 208  Q
    |||||||||| || || ||| ||||||||||||| ||||||||||||||||||||||| |||||||||| | |       |||| || ||||||||||||    
T  44164642 ttttaccactagaccactaacatttttattgaaaaattgttgcttctaaaatggatatgtaatcctaaagggctttttttaagccaccaacactcatttt 44164741  T
Q  209 tattgtgtttatttatatgtttgattactttcacataatttaatttatgactttgattccata 271  Q
    ||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||    
T  44164742 tattgtgtttatttccatgtttgattattttcacataatttaatttatgactttgattccata 44164804  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 143 - 271
Target Start/End: Complemental strand, 17724714 - 17724585
Alignment:
Q  143 atattgttgcttctaaaatggatatctaatcctaaatgccnnnnnnnaagc-actaacactcatttttattgtgtttatttatatgtttgattactttca 241  Q
    |||||||| ||||||||||||||||  ||||||||| |||       |||| | ||||||||||||| |||||||||||||  | |||||||||||||||    
T  17724714 atattgtttcttctaaaatggatatgcaatcctaaaggcctttttttaagccattaacactcattttgattgtgtttattttcacgtttgattactttca 17724615  T
Q  242 cataatttaatttatgactttgattccata 271  Q
    ||||||||||||||||||||| ||||||||    
T  17724614 cataatttaatttatgactttaattccata 17724585  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 110 - 266
Target Start/End: Complemental strand, 41061669 - 41061512
Alignment:
Q  110 ttttaccactggatcattaatatttttattgaaatattgttgcttctaaaatggatatctaatcctaaatgccnnnnnnnaagc-actaacactcatttt 208  Q
    |||||| ||| || || ||| ||||||||||||||||| ||| || |||||| |||||  ||||||||| ||        |||| || ||||||||||||    
T  41061669 ttttacaactagaccactaacatttttattgaaatatttttgtttataaaatagatatgcaatcctaaaggcttttttttaagccaccaacactcatttt 41061570  T
Q  209 tattgtgtttatttatatgtttgattactttcacataatttaatttatgactttgatt 266  Q
    ||||||||||||||  ||||||||||||||||| |||||||| |||| || |||||||    
T  41061569 tattgtgtttatttccatgtttgattactttcaaataatttagtttaagagtttgatt 41061512  T

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Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 109 - 267
Target Start/End: Original strand, 22209426 - 22209584
Alignment:
Q  109 tttttaccactggatcattaatatttttattgaaatattgttgcttctaaaatggatatctaatcctaaatgccnnnnnnnaagcactaacactcatttt 208  Q
    ||||||||| | || || ||| |||||||||||||||| ||||||||||||||||||||  |||||||||||||       ||||  |||||||||||||    
T  22209426 tttttaccaatagaccactaacatttttattgaaatatggttgcttctaaaatggatatggaatcctaaatgcctttttttaagccataacactcatttt 22209525  T
Q  209 tattgtgtttatttatatgtttgattactttcacataatttaatttatgactttgattc 267  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||    
T  22209526 tattgtgtttattttcatgtttgattactttcacataatttaatttatgaatttgattc 22209584  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 42935613 - 42935681
Alignment:
Q  110 ttttaccactggatcattaatatttttattgaaatattgttgcttctaaaatggatatctaatcctaaa 178  Q
    |||||||||| || || ||| ||||||||||||| ||||||||||||||||| |||||  |||||||||    
T  42935613 ttttaccactagaccactaacatttttattgaaagattgttgcttctaaaatagatatgcaatcctaaa 42935681  T

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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 109 - 271
Target Start/End: Complemental strand, 33813401 - 33813240
Alignment:
Q  109 tttttaccactggatcattaatatttttattgaaatattgttgcttctaaaatggatatctaatcctaaatgccnnnnnnnaagc-actaacactcattt 207  Q
    ||||||||||| || || ||| ||||||||||||| ||| ||||||||||||||||||| |||||||||| ||        |||| ||||||||||||||    
T  33813401 tttttaccactagaccaataacatttttattgaaaaattattgcttctaaaatggatatgtaatcctaaaggc--ttttttaagccactaacactcattt 33813304  T
Q  208 ttattgtgtttatttatatgtttgattactttcacataatttaatttatgactttgattccata 271  Q
    |||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||    
T  33813303 ttattgtgtttattttcatgtttgattactttcacaaaatttaatttatgactttgattccata 33813240  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 45730581 - 45730512
Alignment:
Q  202 tcatttttattgtgtttatttatatgtttgattactttcacataatttaatttatgactttgattccata 271  Q
    |||||||||||||||| ||||  |  |||||||| || |||  |||||||||||||| ||||||||||||    
T  45730581 tcatttttattgtgttcatttccagctttgattagttccactaaatttaatttatgattttgattccata 45730512  T

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Target: scaffold0013 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 131 - 266
Target Start/End: Original strand, 44251 - 44387
Alignment:
Q  131 atttttattgaaatattgttgcttctaaaatggatatctaatcctaaatgccnnnnnnnaagc-actaacactcatttttattgtgtttatttatatgtt 229  Q
    ||||||||||||||||||||||||||||||| |||||  ||||||||| |||       |||| || ||||||||||||||||||||||||||  | |||    
T  44251 atttttattgaaatattgttgcttctaaaatagatatgcaatcctaaaggcctttttttaagccaccaacactcatttttattgtgtttatttccacgtt 44350  T
Q  230 tgattactttcacataatttaatttatgactttgatt 266  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  44351 tgattactttcacattatttaatttatgagtttgatt 44387  T

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Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 131 - 271
Target Start/End: Original strand, 11502433 - 11502575
Alignment:
Q  131 atttttattgaaatattgttgcttctaaaatggatatctaatcctaaatgccnnnnnnn---aagc-actaacactcatttttattgtgtttatttatat 226  Q
    |||||||||| |||||||||||||||||||| |||||  |||||||||||||          |||| |||||||||||||||||||||  ||||||  ||    
T  11502433 atttttattggaatattgttgcttctaaaatagatatgaaatcctaaatgccttttttttctaagccactaacactcatttttattgt--ttatttccat 11502530  T
Q  227 gtttgattactttcacataatttaatttatgactttgattccata 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  11502531 gtttgattactttcacataatttaatttatgactttgattccata 11502575  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 6095880 - 6095954
Alignment:
Q  197 aacactcatttttattgtgtttatttatatgtttgattactttcacataatttaatttatgactttgattccata 271  Q
    ||||||||||||||||||||||||||  | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  6095880 aacactcatttttattgtgtttatttccacgtttgattactttcacataatttagtttatgagtttgattccata 6095954  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 110 - 263
Target Start/End: Complemental strand, 8207795 - 8207637
Alignment:
Q  110 ttttaccactggatcattaatatttttattgaaatattgttgcttctaaaatggatatctaatcctaaatgccnnnnnnnaagc-----actaacactca 204  Q
    |||||||||| || || ||||||||||||||||| ||||||||||||||||| |||||  ||||||||| ||        ||||     || ||||||||    
T  8207795 ttttaccactagaccactaatatttttattgaaagattgttgcttctaaaatagatatgcaatcctaaaggcatttttttaagccaccaaccaacactca 8207696  T
Q  205 tttttattgtgtttatttatatgtttgattactttcacataatttaatttatgactttg 263  Q
    ||||||||| ||||||||  | |||||||||||||||||||||||| ||||||| ||||    
T  8207695 tttttattgcgtttatttccacgtttgattactttcacataatttagtttatgagtttg 8207637  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 17909636 - 17909700
Alignment:
Q  202 tcatttttattgtgtttatttatatgtttgattactttcacataatttaatttatgactttgatt 266  Q
    |||||||||||||||| ||||  |  ||| |||||||||||  ||||||||||||||||||||||    
T  17909636 tcatttttattgtgttgattttcacctttcattactttcactgaatttaatttatgactttgatt 17909700  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 110 - 271
Target Start/End: Original strand, 10484507 - 10484670
Alignment:
Q  110 ttttaccactggatcattaatatttttattgaaatattgttgcttctaaaatggatatctaatcctaaatgccnnnnnnn--aagc-actaacactcatt 206  Q
    |||||||||| || || ||| |||||||||||||||||||||||||||||||  ||||  ||||||||| |||         |||| || ||||||||||    
T  10484507 ttttaccactagaccactaacatttttattgaaatattgttgcttctaaaatatatatgcaatcctaaaggcctttttttttaagccaccaacactcatt 10484606  T
Q  207 tttattgtgtttatttatatgtttgattactttcacataatttaatttatgactttgattccata 271  Q
    ||||||||||| ||||  | |||||||||||||||||||||||||||||||| ||||||||||||    
T  10484607 tttattgtgtt-atttccacgtttgattactttcacataatttaatttatgagtttgattccata 10484670  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 271
Target Start/End: Complemental strand, 19251615 - 19251541
Alignment:
Q  197 aacactcatttttattgtgtttatttatatgtttgattactttcacataatttaatttatgactttgattccata 271  Q
    ||||||||||||||||||||||||||  |  |||||||||||||||| |||||| ||||| | ||||||||||||    
T  19251615 aacactcatttttattgtgtttatttccacatttgattactttcacagaatttagtttataagtttgattccata 19251541  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 232
Target Start/End: Original strand, 25164761 - 25164864
Alignment:
Q  131 atttttattgaaatattgttgcttctaaaatggatatctaatcctaaatgcc-nnnnnnnaag-cactaacactcatttttattgtgtttatttatatgt 228  Q
    ||||||||||||||||||| |||||||||||||||||  ||||||||| |||        ||| ||||||||||||||| ||||||||||||||| | ||    
T  25164761 atttttattgaaatattgtcgcttctaaaatggatatgcaatcctaaaggccttctttttaagccactaacactcatttatattgtgtttatttacacgt 25164860  T
Q  229 ttga 232  Q
    ||||    
T  25164861 ttga 25164864  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 131 - 267
Target Start/End: Complemental strand, 5586141 - 5586003
Alignment:
Q  131 atttttattgaaatattgttgcttctaaaatggatatctaatcctaaatgccnnnnnnn-aagc-actaacactcatttttattgtgtttatttatatgt 228  Q
    |||||| |||||||||||||||||||||||| |||||  ||||||||| |||        |||| || ||||||||||||||||||||||||||  ||||    
T  5586141 atttttgttgaaatattgttgcttctaaaatagatatgcaatcctaaaggccttttatttaagccaccaacactcatttttattgtgtttatttccatgt 5586042  T
Q  229 ttgattactttcacataatttaatttatgactttgattc 267  Q
    ||||||||||||||| |||||| ||||||| ||||||||    
T  5586041 ttgattactttcacagaatttagtttatgagtttgattc 5586003  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 268
Target Start/End: Original strand, 3621982 - 3622141
Alignment:
Q  110 ttttaccactggatcattaatatttttattgaaatattgttgcttctaaaatggatatctaatcctaaatgccnnnnnnnaag-cactaacactcatttt 208  Q
    ||||| |||| ||||| ||| ||||||||||||||||| ||||||||||||| |||||  ||||||||| |||       ||| ||| ||| ||||||||    
T  3621982 ttttatcactagatcactaacatttttattgaaatattcttgcttctaaaatagatatgcaatcctaaaagccttttttaaagtcaccaacgctcatttt 3622081  T
Q  209 tattgtgtttatttatatgtttgattactttcacataatttaatttatgactttgattcc 268  Q
    ||||||||||||||  |  |||||||||||||||| ||| || ||||||| |||||||||    
T  3622082 tattgtgtttatttccacctttgattactttcacaaaatgtagtttatgagtttgattcc 3622141  T

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