View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4411-Insertion-11 (Length: 190)
Name: NF4411-Insertion-11
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411-Insertion-11 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 1e-98; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 8 - 189
Target Start/End: Original strand, 37162472 - 37162653
Alignment:
| Q |
8 |
aatggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaagattgcc |
107 |
Q |
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| T |
37162472 |
aatggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaagattgcc |
37162571 |
T |
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| Q |
108 |
ttgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctcgaatcctatattgatggctacaa |
189 |
Q |
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| T |
37162572 |
ttgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctcgaatcctatattgatggctacaa |
37162653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 37154729 - 37154886
Alignment:
| Q |
9 |
atggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaagattgcct |
108 |
Q |
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| T |
37154729 |
atggtacctgaaatagtacagtcacggtaaaattgacgcatggcgtgtacataaagtgtgtcttgatatccatccattgagcaattgaagaagatagtct |
37154828 |
T |
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| Q |
109 |
tgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctc |
166 |
Q |
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| T |
37154829 |
tatctccttgaactcttagtgccactgcttgatgtttttgtggaccagctgaattctc |
37154886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 37150648 - 37150488
Alignment:
| Q |
9 |
atggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaagattgcct |
108 |
Q |
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| T |
37150648 |
atggtacctgaaatggtgcagtcacggtagaattgacgcatggcgtgtacataaagtgtgtcttgatatccatccattgagcaattgtagaagatagcct |
37150549 |
T |
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| Q |
109 |
tgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctcgaa |
169 |
Q |
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| T |
37150548 |
tatctccttgaactcttagtgccactgcttgatgtttttgtggaccagctgagttctcgaa |
37150488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 37159473 - 37159313
Alignment:
| Q |
9 |
atggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaagattgcct |
108 |
Q |
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| T |
37159473 |
atggtacctgaaatggtgcagtcacggtagaattgacgcatggcgtgtacataaagtgtgtcttgatatccatccattgagcaattgtagaagatagcct |
37159374 |
T |
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| Q |
109 |
tgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctcgaa |
169 |
Q |
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| T |
37159373 |
tatctccttgaactcttagtgccactgcttgatgtttttgtggaccagctgagttctcgaa |
37159313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 1e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 9 - 184
Target Start/End: Original strand, 91821 - 91996
Alignment:
| Q |
9 |
atggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaagattgcct |
108 |
Q |
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||||| |||||||| ||||| || || |||||||||||||||| ||||||||| | ||||||||||||||| |||||||| || ||| | ||||| |||| |
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| T |
91821 |
atggtacctgaaatagtacagtcgcggtaaaattgacgcatggcgtgtacataaagtgtgtcttgatatccatccattgagcaattgaagaagatagcct |
91920 |
T |
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| Q |
109 |
tgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctcgaatcctatattgatggc |
184 |
Q |
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| T |
91921 |
tatctccttgaactcttagtgccactgcttgatgtttttgtggaccagctgaattctcaaaacccatattaatggc |
91996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 95128 - 95285
Alignment:
| Q |
9 |
atggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaagattgcct |
108 |
Q |
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||||| |||||||| ||||| || || |||||||||||||||| ||||||||| | ||||||||||||||| |||||||| || ||| | ||||| |||| |
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| T |
95128 |
atggtacctgaaatagtacagtcgcggtaaaattgacgcatggcgtgtacataaagtgtgtcttgatatccatccattgagcaattgaagaagatagcct |
95227 |
T |
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| Q |
109 |
tgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctc |
166 |
Q |
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| T |
95228 |
tatctccttgaactcttagtgccactgcttgatgtttttgtggaccagctgaattctc |
95285 |
T |
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