View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4411-Insertion-3 (Length: 887)
Name: NF4411-Insertion-3
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411-Insertion-3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 8 - 497
Target Start/End: Complemental strand, 40166684 - 40166185
Alignment:
| Q |
8 |
cttcttctaattattgcccaatcaaattggtgatagaatccaccatctannnnnnngggatagtgttgtacattgcgagaagaattctcgcgagtgaatc |
107 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
40166684 |
cttcttctaattattgcctgatcaaattggtgatagaatccaccatctatttttttgggatagtgttgtacatcgcgagatttcttctcgcgagtgaatc |
40166585 |
T |
|
| Q |
108 |
acgaatatgcaaatgcttttagaacaataaaaatataggctccacttaccataaaagcagttatcgaaataaaaggaggtgttatttgtctgtcgtaaat |
207 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40166584 |
acaaatatgcaaatgcttttagaacaataaaaatataggctccacttaccataaaggcagttgtcgaaataaaaggaggtgttatttgtctgtcgtgaat |
40166485 |
T |
|
| Q |
208 |
gattttgtcgctgtatgaagcattatccannnnnnngtctatctctattcaaattctttatttgtttcaacaagaatggagatggtctaacccgacttga |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40166484 |
gattttgtcgctgtatgaagcattatccatttttttgtctatctctattcaaattctttatttgtttcaacaagaatggagatggtctaacccgacttga |
40166385 |
T |
|
| Q |
308 |
cattattgaagttgagatgtgataaaccactcaatgatattgtaagagtaatacaaacttatgctcgaagactatacatcttaaagaattttgaacaacc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40166384 |
cattattgaagttgagatgtgataaaccactcaatgatattgtaagagtaatacaaacttatgctcgaagac--tacatcttaaagaattttgaacaacc |
40166287 |
T |
|
| Q |
408 |
ttaattatt------------aatgaaatgtacaactttcaataaaatgtttttatctttagtagacgtataaatatccgatgacacgtgttaacatttt |
495 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40166286 |
ttaattattttttggatggaaaatgaaatgtacaactttcaataaaatgtttttatctttagtagacgtataaatatccgaggacacgtgttaacatttt |
40166187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 557 - 887
Target Start/End: Complemental strand, 40166132 - 40165802
Alignment:
| Q |
557 |
cttactaatgtgataaaacatgttgtagagcaattaaacatgttgtgacagtggtggcctccgatccaaaacaaaacattttcgtacacgacactcacct |
656 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40166132 |
cttactaatgtgataaaacatgttgtagagcaattaaacatgttgtgacagtggtggcctccgatccaaaacaaaacattttcgtacacgacactcacct |
40166033 |
T |
|
| Q |
657 |
tgatacagcagcagatggtcgatcgggatgtgtaacttacaagaacacaatagatctaaagttaaagacaactctttgnnnnnnnnnnnnnnnnnncaca |
756 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40166032 |
tgatacagcagcagatggtcgatcgggatgtgtaacttacaagaacacaatagatctaaagttaaagacaactctttgtttttttaatttatttttcaca |
40165933 |
T |
|
| Q |
757 |
ccgtataatattgcaacttttctgatattcttgcgttttaattcactatttgacaaaatggtgaggaaacttagaacacattttttccggaaaaggagga |
856 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40165932 |
ccgtataatattgcaacttttctgatattcttgcgttttaattcactatttgacaaaatggtgaggaaacttggaacacattttttccggaaaaggagga |
40165833 |
T |
|
| Q |
857 |
ggaaaattgctcatcaacgttgcctttacct |
887 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
40165832 |
ggaaaattgctcatcaacgttgcctttacct |
40165802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University