View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4411-Insertion-4 (Length: 750)
Name: NF4411-Insertion-4
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411-Insertion-4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 407 - 750
Target Start/End: Complemental strand, 38958091 - 38957748
Alignment:
| Q |
407 |
gtgaaagacttcttcatttttcttatatttcctacccctcaaagtcagcccctcccttccaaactcccaaacaacacattggagaatttttgaagataga |
506 |
Q |
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| T |
38958091 |
gtgaaagacttcttcatttttcttatatttccgacccctcaaagtcagcccctcccttccaaactcccaaacaacaccttagagaatttttgaagataga |
38957992 |
T |
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| Q |
507 |
aagaaacattctaagactttgggagttgagacttgaataagggagtaggaagggtggttaaactcccactttgtttcaatgtcagggtagggtggttgga |
606 |
Q |
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| T |
38957991 |
aagaaacattcgaagactttgggagttgagacttgaatgagggagtagcaagggtggttaaactcccactttgtttcaatgtcagggtagggtggttgga |
38957892 |
T |
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| Q |
607 |
cttaagaaaaatggaaatagtaagaataaactcttgatcactgattcaaggaaaatctaataacatttcatagcccaactgtcctaaaatcctaaccgtt |
706 |
Q |
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| T |
38957891 |
cttgagaaaaatggaaatagtaagaataaactcttgatcactgattcaaggaaaatctaataacatttcatagcccaactgtcctaaaatcctaaccgtt |
38957792 |
T |
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| Q |
707 |
tgttgaaggggtaggaatagctttatcatatccttaatattccc |
750 |
Q |
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| T |
38957791 |
tgttgaaggggtaggaatagctttatcatatccttaatattccc |
38957748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 341
Target Start/End: Complemental strand, 38958493 - 38958157
Alignment:
| Q |
7 |
aaggctgacctttcctgccatagaggtagcaaaaacatcccattcaca---cagtaaatcaaacttaagtgagagaggtcacaataaatacgagtgaagg |
103 |
Q |
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| T |
38958493 |
aaggctgacctttcctgccatagaggtagcaaaaatatcccattcacaaaacagtaaatcaaacttaagtgagaggggtcacaataaatacgagtgaagg |
38958394 |
T |
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| Q |
104 |
agcaccctaggctatggcgggaaggttgacgggaaaatgagggaagtgctttggnnnnnnnnnntgatcgaatggaagaaatagaagactttgaaagagg |
203 |
Q |
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| T |
38958393 |
agcaccctaggctatggcgggaaggttgacgggaaaatgagggaagtgctttggaaaaaaaca-tgatcaaatggaagaaatagaagactttaaaagagg |
38958295 |
T |
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| Q |
204 |
aagaattagggggtttatttttcttcggactacaaaaccttcgtaatttggaggaaactcaattgtcttaaaagatgattttggatggtttatattaatt |
303 |
Q |
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| T |
38958294 |
aagaattagggggtttatttttcttcggactacaaaaccttcgtaatttgggggaaactcaattggcttaaaagatgattttggatggtttatattaatt |
38958195 |
T |
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| Q |
304 |
attcaaattcaatttaggctgctatcatataattaaga |
341 |
Q |
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| T |
38958194 |
attcaaattcaatttaggctggtatcatataattaaga |
38958157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 278 - 316
Target Start/End: Complemental strand, 47076941 - 47076903
Alignment:
| Q |
278 |
atgattttggatggtttatattaattattcaaattcaat |
316 |
Q |
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| T |
47076941 |
atgattttggagggtttatattaattattcaaattcaat |
47076903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 319
Target Start/End: Complemental strand, 42010222 - 42010177
Alignment:
| Q |
274 |
aaagatgattttggatggtttatattaattattcaaattcaattta |
319 |
Q |
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| T |
42010222 |
aaagaggattttagagggtttatattaattattcaaattcaattta |
42010177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 407 - 449
Target Start/End: Original strand, 22394331 - 22394373
Alignment:
| Q |
407 |
gtgaaagacttcttcatttttcttatatttcctacccctcaaa |
449 |
Q |
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| T |
22394331 |
gtgaaagatttcttcatttttcttatattttccacccctcaaa |
22394373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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