View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4411-Insertion-5 (Length: 702)

Name: NF4411-Insertion-5
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4411-Insertion-5
NF4411-Insertion-5
[»] chr4 (1 HSPs)
chr4 (7-702)||(40706480-40707175)


Alignment Details
Target: chr4 (Bit Score: 644; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 7 - 702
Target Start/End: Original strand, 40706480 - 40707175
Alignment:
Q  7 agaatgcacttggccaatcaggtatgcatacttgcgcctgcattgcgtctcttaatgcaagttcagcctgatcattcatcaagtaggcgaaggctctcct 106  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40706480 agaatgcagttggccaatcaggtatgcatacttgcgcctgcattgcgtctcttaatgcaagttcagcctgatcattcatcaagtaggcgaaggctctcct 40706579  T
Q  107 tgcaaacacggttgcggatggaacagacatcataaccaccaactgtttaaaatcaaagaaatcaaatgcatttagactatgctcaactttcgcagtgagt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  40706580 tgcaaacacggttgcggatggaacagacatcataaccaccaactgtttaaaatcaaagaaatcaaatgcatttagactatgctcaactttcgcagtgaat 40706679  T
Q  207 cataataactcatgataaacactcagcaaaactaaggatgttcaacaacaagttttgatcacaacatgttcttctggtgtacaaatttggcattcttaat 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  40706680 cataataactcatgataaacactcagcaaaactaaggatgttcaacaacaggttttgatcacaacatgttcttctggtgtacaaatttggcattctgaat 40706779  T
Q  307 ttaagggttataaggactgcaacaaattccgttcaaggcctttggtacaaaaacaatccataatattttactggaaatagatgccatgcattggaagaat 406  Q
    ||||||||||||||||||||||||  |||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40706780 ttaagggttataaggactgcaacattttccgtacaagacctttggtacaaaaacaagccataatattttactggaaatagatgccatgcattggaagaat 40706879  T
Q  407 acaatagaagtgtctcaaacacactctataaaccacaatgaaaagtgaaacagtgcatttaccttggaataatactcaattgcatttttgaaatccttat 506  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40706880 acaatagaagtgtctcaaccacactctataaaccacaatgaaaagtgaaacagtgcatttaccttggaataatactcaattgcatttttgaaatccttat 40706979  T
Q  507 ctctaaatgcaatatcgccaaacttttttgtgtttaagatgtcctgcacttgttgtatccactcttgaaatgaaagctgcaattacatttttactcatta 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40706980 ctctaaatgcaatatcgccaaacttttttgtgtttaagatgtcctgcacttgttgtgtccactcttgaaatgaaagctgcaattacatttttactcatta 40707079  T
Q  607 gccaagagcaaccgaaaaaagtgaccataataacagctcatatttaatgagcaatacttcattaaatgaaccagccttattgacacatatcctaat 702  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  40707080 gccaagagcaaccgaaaaaagtgaccataataacagctcatatttaatgagcaatacttcattaaatgaaccaaccctattgacacatatcctaat 40707175  T

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