View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4411-Insertion-6 (Length: 598)
Name: NF4411-Insertion-6
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 8 - 598
Target Start/End: Complemental strand, 18169395 - 18168805
Alignment:
| Q |
8 |
atatcatgattaaaatttgcttcaatcataattctaagtacatttttggattgacagtgagtttggtagaatcacagtgtaccaccgtgatttcgtcaaa |
107 |
Q |
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| T |
18169395 |
atatcatgaataaaacttgattcaatcataattctaagtacatttttggattgacagtgtgtttggtagaatgacagtgtaccaccgtgatttcgtcaaa |
18169296 |
T |
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| Q |
108 |
tacattgtgtatccaaatatgcactaaatgttgcataagtacgtgttaatcgattaggatgttgatttcaggtgcagaaacatttgcagcttcgaatcga |
207 |
Q |
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| T |
18169295 |
tacattgtgtatccaaatatgcactaaatgttgcataagtacgtgttaatcgattaggatgttgatttcaggtgcagaaacatttgcagcttcgaattga |
18169196 |
T |
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| Q |
208 |
agctcaaggaaaatatttacaatcggtactaacgaaggcgcaggaagccctctctggatacaattcttcaccaattgggataaaactcacagaagatgaa |
307 |
Q |
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| T |
18169195 |
cgctcaaggaaaatatttacaatcggtactaatgaaggcgcaggaagccctctctggatacaattcttcaccaattgggataaaactcacaaaagatgaa |
18169096 |
T |
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| Q |
308 |
ctctctcagttggttactatgatcaacaatgcttgtccaagttctccaatctcagatctaacagaatcaagagggttaagtttaaactacgaggagagga |
407 |
Q |
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| T |
18169095 |
ctctctcaattggttactatgatcaacaatgcttgtccaagttctccaatctcagatctaacagaatcaagagggttaagtttaaactacgaggagagga |
18168996 |
T |
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| Q |
408 |
aacatgacaatggaacttctttgtgttcattggaaagttcattgacatcttctgagagctcagagagaaaggaagagaaacattcattagaagatataag |
507 |
Q |
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| T |
18168995 |
aacatgaaaatggaacttctttgtgttcattggaaagttctttgacatcttctgagagctcagagagaaaggaagagaaacattcattagaagatataag |
18168896 |
T |
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| Q |
508 |
agacatcaaaaattctagtgctatttcacttgaattgccactaatggccatgcactctaaagagaaatcattgtcgtgtccaatgtttgtg |
598 |
Q |
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| T |
18168895 |
agacttcaaaaattctagtgctatttcacttgaattgccactaatggccatgcactcagaagagaaatcattgtcgtgtccaatgtctgtg |
18168805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 31748617 - 31748532
Alignment:
| Q |
170 |
tgatttcaggtgcagaaacatttgcagcttcgaatcgaagctcaaggaaaatatttacaatcggtactaacgaaggcgcaggaagc |
255 |
Q |
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| T |
31748617 |
tgatttcaggtgcagaaacatttacagtttagaattgaagctcaaggaaagtacttacaatcagtactaatgaaggcacaggaagc |
31748532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 411
Target Start/End: Complemental strand, 31748452 - 31748370
Alignment:
| Q |
329 |
atcaacaatgcttgtccaagttctccaatctcagatctaacagaatcaagagggttaagtttaaactacgaggagaggaaaca |
411 |
Q |
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| T |
31748452 |
atcaacaatgcatgtcctagttctccactttcagaactgacagaaacaagaggttttagtttaaacttcggtgagaggaaaca |
31748370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 31502156 - 31502192
Alignment:
| Q |
52 |
tttggattgacagtgagtttggtagaatcacagtgta |
88 |
Q |
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| T |
31502156 |
tttggattgacagtgagtttggcagaatcacggtgta |
31502192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 32508620 - 32508668
Alignment:
| Q |
52 |
tttggattgacagtgagtttggtagaatcacagtgtaccaccgtgattt |
100 |
Q |
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| T |
32508620 |
tttggatttacggtgagtatggtagaatcacagtgtgccactgtgattt |
32508668 |
T |
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