View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4411-Insertion-7 (Length: 533)
Name: NF4411-Insertion-7
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411-Insertion-7 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 7 - 389
Target Start/End: Original strand, 8385227 - 8385609
Alignment:
| Q |
7 |
acttatgagtgttttaagatcatcagcatgttgataaagtgtctttttactcgggtatagtacaagatcattttgtgcttctttgagctcatctagtgtt |
106 |
Q |
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| T |
8385227 |
acttatgagtgttttaagatcatcagcatgttgataaagtgtctttttactcgggtatagtacaagatcattttgtgcttctttgagctcatctagtgtt |
8385326 |
T |
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| Q |
107 |
tcatcaatggtttccaaacaatcatgaagggcaattttctctcttttagtaagactttttcgcaaaagaagtttttcgacggtgaagtaattgtgttcaa |
206 |
Q |
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| T |
8385327 |
tcatcaatggtttccaaacaatcatgaagagcaattttctctcttttagtaagactttttcgcaaaagaagtttttcgacggtgaagtaattatgttcaa |
8385426 |
T |
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| Q |
207 |
cggctctagttgtgatgtttagagacaatgaaatcacatctttgtggttggtgattttatgagttatgtttggttcagaggaaatggctgagaaacatag |
306 |
Q |
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| T |
8385427 |
ctgctctagttgtgatgtttagagacaatgaaatcacatctttgtggttggtgattttatgagttatgtttggttcggaggaaatggctgagaaacatag |
8385526 |
T |
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| Q |
307 |
ttcagggtagagagtggtggtgcaagcggatttgagtatggcgtgagaatggtgagagagtgaaagagaagatgaagcaatgc |
389 |
Q |
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| T |
8385527 |
ttcagggtagagagtggtggtgcaagcggatttgagtatggcgtgagaatggtgagagagtgaaagagaagatgaagcaatgc |
8385609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 429 - 533
Target Start/End: Original strand, 8385649 - 8385753
Alignment:
| Q |
429 |
caacaatggctactatggaagctacaatgagaagggttgtaaagagggagatgaggagttttttcttgttgccggaattcgagattccggcgagggattg |
528 |
Q |
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| T |
8385649 |
caacaatggctactatggaagctacaatgagaagggttgtaaagagggagatgaggagttttttcttgttgccggaattcgagattccggcgagggattg |
8385748 |
T |
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| Q |
529 |
tttta |
533 |
Q |
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| T |
8385749 |
tttta |
8385753 |
T |
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