View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4411-Insertion-8 (Length: 422)

Name: NF4411-Insertion-8
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4411-Insertion-8
NF4411-Insertion-8
[»] chr1 (1 HSPs)
chr1 (7-422)||(27733187-27733604)


Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 7 - 422
Target Start/End: Original strand, 27733187 - 27733604
Alignment:
Q  7 actacccaaatcattatccacagtggtcacttcagttgggtggaaatacgcctctgccacgttgttgacttcttcagagtgatctttgagttcacctagg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27733187 actacccaaatcattatccacagtggtcacttcagttgggtggaaatacgcctctgccacgttgttgacttcttcagagtgatatttgagttcacctagg 27733286  T
Q  107 ccatcctccacgaaagaaatatccgaggattctacaggggcggaagtgcattcatctaaactcggagttgagtcagcatacatactaccagaactgtccc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27733287 ccatcctccacgaaagaaatatccgaggattctacaggggcggaagtgcattcatctaaactcggagttgagtcagcatacatactaccagaactgtccc 27733386  T
Q  207 cctgaagaaattcagttaataccgtggtaccatcatccgagccgtcaaccttctcattctgacctttaaattgtattaaagttggtcatcagtcatgaat 306  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27733387 cctgaagaaattcagttgataccgtggtaccatcatctgagccgtcaaccttctcattctgacctttaaattgtattaaagttggtcatcagtcatgatt 27733486  T
Q  307 gtgagtaatgcagaataata--gcaataagaaagaagaaattgtttgacctgttaacagaacctcaatatcatttgcagcatccgatctttcatctaaac 404  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27733487 gtgagtaatgcagaataatagtgcaataagaaagaagaaattgtttgacctgttaatagaacctcaatatcatttgcagcatccgatctttcatctaaac 27733586  T
Q  405 cttttcccgtttctaaag 422  Q
    ||||||||||||||||||    
T  27733587 cttttcccgtttctaaag 27733604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University