View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4411-Insertion-9 (Length: 412)
Name: NF4411-Insertion-9
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411-Insertion-9 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 412
Target Start/End: Complemental strand, 31265437 - 31265042
Alignment:
| Q |
8 |
gatgatatgaggacattgaaagaaaatagtgttcatgttgagaaaaatatttcaaaaccaagtggtggggaagtaggaaataggtcaaaacatgtaggaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31265437 |
gatgatatgaggacattgaaagaaaatagtgttcatgttgagaaaaatatttcaaaaccaagtggtggggaagtaggaaataggtcaaaacatgtaggaa |
31265338 |
T |
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| Q |
108 |
ataagtgtggtaagatggatgcagttaatgataccttcaatgttaggatataaactttctatttgcatnnnnnnnnnnnnnnnnnnngtgtttgcacact |
207 |
Q |
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| T |
31265337 |
ataagtgtggtaagatggatgcagttaatgatacctccaatgataggatataaactttctatttgcataaaaaaaaaaaaaaaa---gtgtttgcacact |
31265241 |
T |
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| Q |
208 |
gtcaacatgcccatgccatataagacgctccttatggccataatattgttctccaatcttaggcgaagtaaggctttctccattatgtcgaacttattga |
307 |
Q |
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| T |
31265240 |
gtcaacatgcc------atataatacgctccttatggccataatattgttctccaatcttaggcgaagtaaggctttctccattatgtcgaacttattga |
31265147 |
T |
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| Q |
308 |
agatacagtaggagaaaaaagagtgatagagacaaactaaaaactgaagattaaatggtgacaaatttgtaaaatagttgaaaaatgcactttttatctg |
407 |
Q |
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| T |
31265146 |
agatacagtaggagaaaaaagagtgatagagacaaactaaaaactgaagattaaatggtgacaaatttgtaaaatagttgaaaaatgcactttttatcta |
31265047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 22045418 - 22045549
Alignment:
| Q |
8 |
gatgatatgaggacattgaaagaaaatagtgttcatgttgagaaaaatatttcaaaaccaagtggtggggaagtaggaaataggtcaaaacatgtaggaa |
107 |
Q |
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| T |
22045418 |
gatgatatgaggatattaaaagaaaatagtgctcacggtagggaaaatatttcgatgccaagtagcgtggaagtaggaagtgggtcaaaacaggtaggag |
22045517 |
T |
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| Q |
108 |
ataagtgtggtaagatggatgcagttaatgat |
139 |
Q |
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| T |
22045518 |
ttaagtgtggtaagattgatgcggataatgat |
22045549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 44355805 - 44355936
Alignment:
| Q |
8 |
gatgatatgaggacattgaaagaaaatagtgttcatgttgagaaaaatatttcaaaaccaagtggtggggaagtaggaaataggtcaaaacatgtaggaa |
107 |
Q |
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| T |
44355805 |
gatgatatgaggatattaaaagaaaatagtgctcacggtagggaaaatatttcgatgccaagtagcgtggaagtaggaagtgggtcaaaacaggtaggag |
44355904 |
T |
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| Q |
108 |
ataagtgtggtaagatggatgcagttaatgat |
139 |
Q |
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| T |
44355905 |
ttaagtgtggtaagattgatgcggataatgat |
44355936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 84312 - 84179
Alignment:
| Q |
8 |
gatgatatgaggacat--tgaaagaaaatagtgttcatgttgagaaaaatatttcaaaaccaagtggtggggaagtaggaaataggtcaaaacatgtagg |
105 |
Q |
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||||||||||||| || | |||| |||||||||||| | | || |||||||||| | |||||| | | ||||||||||| | |||||||||| ||||| |
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| T |
84312 |
gatgatatgaggagatattaaaagcaaatagtgttcacggtaaggaaaatatttcgatgccaagtagcgtggaagtaggaagtgggtcaaaacaggtagg |
84213 |
T |
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| Q |
106 |
aaataagtgtggtaagatggatgcagttaatgat |
139 |
Q |
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| T |
84212 |
agttaagtgtggtaagattgatgcggataatgat |
84179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 2501494 - 2501625
Alignment:
| Q |
8 |
gatgatatgaggacattgaaagaaaatagtgttcat-gttgagaaaaatatttcaaaaccaagtggtggggaagtaggaaataggtcaaaacatgtagga |
106 |
Q |
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||||||||||||| ||| ||| |||||||||||| || ||||||| |||||| | |||||| | | ||||||||||| | |||||||||| |||||| |
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| T |
2501494 |
gatgatatgaggatattaaaatcaaatagtgttcacagtagagaaaa-tatttctatgccaagtagcgtggaagtaggaagtgggtcaaaacaggtagga |
2501592 |
T |
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| Q |
107 |
aataagtgtggtaagatggatgcagttaatgat |
139 |
Q |
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| T |
2501593 |
gttaagtgtggtaagattgatgcggataatgat |
2501625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 2502045 - 2501926
Alignment:
| Q |
8 |
gatgatatgaggacattgaaagaaaatagtgttcatgttgagaaaaatatttcaaaaccaagtggtggggaagtaggaaataggtcaaaacatgtaggaa |
107 |
Q |
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|||||||||| || ||| |||| |||||||||||| | | | |||||||||| | |||||| | | ||||||||||| | |||||||||| || ||| |
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| T |
2502045 |
gatgatatgatgatatttaaagcaaatagtgttcacggtagggaaaatatttcgatgccaagtagcgtggaagtaggaagtgggtcaaaacaggt-ggag |
2501947 |
T |
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| Q |
108 |
ataagtgtggtaagatggatg |
128 |
Q |
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||||||||||||||| |||| |
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| T |
2501946 |
ttaagtgtggtaagattgatg |
2501926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 31395921 - 31395865
Alignment:
| Q |
8 |
gatgatatgaggacattgaaagaaaatagtgttcatgttgagaaaaatatttcaaaa |
64 |
Q |
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||||||||||||| ||| ||||||||||||||||| | | | |||||||||||||| |
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| T |
31395921 |
gatgatatgaggatattaaaagaaaatagtgttcacggtagggaaaatatttcaaaa |
31395865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 139
Target Start/End: Complemental strand, 12780801 - 12780713
Alignment:
| Q |
51 |
aaaatatttcaaaaccaagtggtggggaagtaggaaataggtcaaaacatgtaggaaataagtgtggtaagatggatgcagttaatgat |
139 |
Q |
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|||||||||| ||||||||||||||||||||||||| | | |||||| |||||||| ||| |||| ||||| |||| ||||||||| |
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| T |
12780801 |
aaaatatttcgaaaccaagtggtggggaagtaggaagtggttcaaaatatgtaggagatagatgtgttaagaaaaatgcggttaatgat |
12780713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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