View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4411_high_1 (Length: 778)

Name: NF4411_high_1
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4411_high_1
NF4411_high_1
[»] chr2 (10 HSPs)
chr2 (9-327)||(10973453-10973777)
chr2 (88-327)||(2973408-2973648)
chr2 (106-327)||(14230934-14231156)
chr2 (638-761)||(10973998-10974121)
chr2 (85-327)||(17826658-17826905)
chr2 (129-207)||(511241-511319)
chr2 (103-244)||(11553321-11553463)
chr2 (101-244)||(11818445-11818589)
chr2 (101-238)||(16206539-16206677)
chr2 (102-190)||(23379917-23380005)
[»] chr8 (7 HSPs)
chr8 (87-310)||(10601022-10601246)
chr8 (88-327)||(20526159-20526401)
chr8 (88-173)||(23558718-23558803)
chr8 (101-238)||(14505721-14505859)
chr8 (101-238)||(37590039-37590177)
chr8 (101-164)||(19299023-19299086)
chr8 (101-238)||(15990412-15990550)
[»] chr1 (11 HSPs)
chr1 (87-305)||(16678732-16678952)
chr1 (87-327)||(47726169-47726415)
chr1 (87-327)||(47747475-47747721)
chr1 (106-277)||(34696110-34696282)
chr1 (101-240)||(41117187-41117327)
chr1 (88-238)||(2002526-2002677)
chr1 (106-206)||(30981259-30981359)
chr1 (425-514)||(47063063-47063148)
chr1 (484-549)||(47026785-47026850)
chr1 (83-238)||(21701457-21701613)
chr1 (101-238)||(30033582-30033720)
[»] chr6 (6 HSPs)
chr6 (83-327)||(30140922-30141167)
chr6 (102-244)||(16416595-16416738)
chr6 (93-244)||(23508844-23508996)
chr6 (101-164)||(34355746-34355809)
chr6 (93-151)||(16890298-16890356)
chr6 (106-143)||(17391997-17392034)
[»] chr4 (15 HSPs)
chr4 (83-327)||(54027686-54027931)
chr4 (84-327)||(12355135-12355379)
chr4 (87-316)||(27066334-27066564)
chr4 (87-316)||(27087435-27087665)
chr4 (137-316)||(27066578-27066758)
chr4 (137-316)||(27066772-27066952)
chr4 (102-187)||(4462624-4462709)
chr4 (92-238)||(28860789-28860936)
chr4 (101-238)||(55227612-55227750)
chr4 (101-245)||(13686001-13686146)
chr4 (101-164)||(54823744-54823807)
chr4 (101-238)||(30859363-30859501)
chr4 (129-168)||(49745960-49745999)
chr4 (101-167)||(20527781-20527847)
chr4 (102-164)||(30190950-30191012)
[»] chr5 (11 HSPs)
chr5 (83-316)||(29754938-29755171)
chr5 (87-327)||(26683384-26683629)
chr5 (102-316)||(5335212-5335427)
chr5 (113-283)||(22864512-22864683)
chr5 (101-244)||(36044911-36045055)
chr5 (114-248)||(40299892-40300027)
chr5 (101-238)||(22292379-22292517)
chr5 (84-176)||(23976592-23976684)
chr5 (101-240)||(27493251-27493391)
chr5 (92-151)||(13948782-13948841)
chr5 (84-151)||(18759803-18759870)
[»] scaffold1964 (1 HSPs)
scaffold1964 (149-327)||(1023-1202)
[»] scaffold0643 (1 HSPs)
scaffold0643 (86-292)||(994-1201)
[»] chr3 (10 HSPs)
chr3 (90-324)||(12370776-12371011)
chr3 (113-176)||(12749485-12749548)
chr3 (88-238)||(18765582-18765733)
chr3 (101-238)||(6006037-6006175)
chr3 (84-164)||(31935315-31935395)
chr3 (106-206)||(45680111-45680211)
chr3 (101-238)||(17790152-17790290)
chr3 (101-238)||(19098594-19098732)
chr3 (101-163)||(36144802-36144864)
chr3 (101-179)||(35906934-35907012)
[»] scaffold0650 (1 HSPs)
scaffold0650 (84-244)||(288-449)
[»] chr7 (6 HSPs)
chr7 (101-244)||(48770106-48770250)
chr7 (101-238)||(32480215-32480353)
chr7 (101-240)||(15633227-15633367)
chr7 (102-164)||(30502581-30502643)
chr7 (83-164)||(3896540-3896621)
chr7 (103-185)||(27810590-27810672)
[»] scaffold0019 (1 HSPs)
scaffold0019 (106-248)||(73345-73488)
[»] scaffold0303 (1 HSPs)
scaffold0303 (92-238)||(14197-14344)
[»] scaffold0040 (1 HSPs)
scaffold0040 (101-164)||(62490-62553)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 9 - 327
Target Start/End: Original strand, 10973453 - 10973777
Alignment:
Q  9 acatcatcaatgcatgtagagtctgagattttttagcgttacatacattcacgagcctctannnnnnnnnnnnn---gagggaaaagtgcttaatgcatt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||| ||||||||||    
T  10973453 acatcatcaatgcatgtagagtctgagattttttagcgttacatacattcacgagcctctattttttttttttttttgagggaaaagtgtttaatgcatt 10973552  T
Q  106 tcattagtaatcaaagtttcaatacaattgggtatat--gaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccac 203  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||    
T  10973553 tcattagtaatcaaagtttcaatacaattggatatatatgaaaataaattgtgggacaaacgagaaatgtggcttcccctacgagagtgtgagccaccac 10973652  T
Q  204 attagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttaccaaattctgttatgtct 302  Q
    |||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10973653 attagcttgtcgccgaacaaactccacccgagagttggtaaacttggacgagagcaaagaccgggaagccgtgatgatgttaccaaattctgttatgtct 10973752  T
Q  303 tcctgacccgaatatagagcatctt 327  Q
    |||||||||||||||||||||||||    
T  10973753 tcctgacccgaatatagagcatctt 10973777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 88 - 327
Target Start/End: Original strand, 2973408 - 2973648
Alignment:
Q  88 aaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcga 187  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||| |||||||| |||||    
T  2973408 aaaagtgcttatagcatttcattagtaatcaaagtttcaatacaattgggtatacgaaaatacatagtgggactagcgagaaatgcggcttcccttgcga 2973507  T
Q  188 gagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttacc 286  Q
    ||||||| ||||| |||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||| |||||||||||| ||    
T  2973508 gagtgtgggccacaacattagcttgtggccgaacaaactccacccgagagttggtaaacttggacgagagcaaagactaggaagccgtgatgatgttgcc 2973607  T
Q  287 aaattctgttatgtcttcctgacccgaatatagagcatctt 327  Q
    |||||| |||||||||||| ||||||| || ||||||||||    
T  2973608 aaattcagttatgtcttcccgacccgagtaaagagcatctt 2973648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 106 - 327
Target Start/End: Complemental strand, 14231156 - 14230934
Alignment:
Q  106 tcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacat 205  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||   |||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  14231156 tcattaataatcaaagtttcaatacaattgggtatatgaaaatagataacgggactagcgagaaatgtggcttcccttgcaagagtgtgagccaccacat 14231057  T
Q  206 tagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttaccaaattctgttatgtcttc 304  Q
    |||||| | ||| |||||||||||| | |||||||||||||||| || | |||||||||||||| |  ||||||||||| |||||||| |||||||||||    
T  14231056 tagcttgtcgcctaacaaactccactctagagttggtaaacttggacaaaagcaaagaccgggaggctgtgatgatgtttccaaattcggttatgtcttc 14230957  T
Q  305 ctgacccgaatatagagcatctt 327  Q
    | |||||||||| ||| ||||||    
T  14230956 ccgacccgaataaagaccatctt 14230934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 638 - 761
Target Start/End: Original strand, 10973998 - 10974121
Alignment:
Q  638 gtgccggacatatttttgattcccacttttcacagcctcatctccatttctttttggtgccatcacctcaaacctaagtttaagtttttataaattctag 737  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10973998 gtgccggacatatttttggttcccactttccacagcctcatctccatttctttttggtgccatcacctcaaacctaagtttaagtttatataaattctag 10974097  T
Q  738 aattatcaacttcgtttctatatc 761  Q
    ||||||||||||||||||||||||    
T  10974098 aattatcaacttcgtttctatatc 10974121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 85 - 327
Target Start/End: Complemental strand, 17826905 - 17826658
Alignment:
Q  85 gggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctg 184  Q
    |||||| |||||||  | ||||||||  ||||||||||||||||||||||| |||||||| ||||||| | |||||||||||| ||| ||||||| |||     
T  17826905 gggaaaggtgcttatagtatttcattgataatcaaagtttcaatacaattgagtatatgataataaatagcgggactagcgaggaatatggcttctccta 17826806  T
Q  185 cgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagag--caaagaccgggaag-tc-gtgatga 279  Q
    | | ||||||||||||||||||| ||| | ||| | |||||||||||  ||||||| |||||||| || ||||   ||||||| ||||| || |||||||    
T  17826805 caacagtgtgagccaccacattatcttgtcgcctagcaaactccaccgtagagttgctaaacttggacaagagtaaaaagaccaggaagctctgtgatga 17826706  T
Q  280 tgttaccaaattctgttatgtcttcctgacccgaatatagagcatctt 327  Q
    ||||||||||||| ||||| |||||| ||| |||||| ||||||||||    
T  17826705 tgttaccaaattcggttatatcttcccgacacgaataaagagcatctt 17826658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 511241 - 511319
Alignment:
Q  129 acaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacatta 207  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||| | ||| |||||||||||||||||||||    
T  511241 acaattgggtatatgaaaataaatagcgggactagcgagaaatgtggcttctcttgcaagagtgtgagccaccacatta 511319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 103 - 244
Target Start/End: Complemental strand, 11553463 - 11553321
Alignment:
Q  103 atttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccacca 202  Q
    ||||||||| |||| | |||||||||| | | |||||||||||||||||| ||||||||||| || ||||||||||| |||||||||   ||| | |||     
T  11553463 atttcattaataataagagtttcaatatattcgggtatatgaaaataaatggtgggactagctagtaatgtggcttctcctgcgagaacatgatcaacct 11553364  T
Q  203 cattagcttat-gccgaacaaactccacccgagagttggtaaa 244  Q
    ||||||||| | |||||  ||||||||||| ||||||||||||    
T  11553363 cattagcttgtcgccgagtaaactccaccctagagttggtaaa 11553321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 244
Target Start/End: Original strand, 11818445 - 11818589
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 200  Q
    ||||||||||| |||| | || ||||||| |||||||||| |||||||||||   ||||||||| || || |||||||| ||||| |||   ||||| ||    
T  11818445 gcatttcattaataataagaggttcaatataattgggtatctgaaaataaataacgggactagctagtaacgtggcttctcctgcaagaacatgagcaac 11818544  T
Q  201 cacattagcttat-gccgaacaaactccacccgagagttggtaaa 244  Q
    | | || |||| | ||| |||||||||||||| ||||||||||||    
T  11818545 ctcgtttgcttgtcgcctaacaaactccaccctagagttggtaaa 11818589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 16206677 - 16206539
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 200  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  | ||||||||| | | | ||||| |||| ||| ||||  ||||| ||    
T  16206677 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagcatgagcaac 16206578  T
Q  201 cacattagcttat-gccgaacaaactccacccgagagtt 238  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  16206577 cacgttggcttgtcgcctaacaaactccaccctagagtt 16206539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 23380005 - 23379917
Alignment:
Q  102 catttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagag 190  Q
    |||||||||| |||| | ||||||||||||||||||||| | ||||||||  | || |||||| || |||||| |||| | ||||||||    
T  23380005 catttcattaataataatagtttcaatacaattgggtattttaaaataaacagcggaactagctagtaatgtgacttctcttgcgagag 23379917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 169; Significance: 3e-90; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 87 - 310
Target Start/End: Complemental strand, 10601246 - 10601022
Alignment:
Q  87 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcg 186  Q
    ||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  10601246 gaaaagtgcttatagcatttcattagtaatcaaagtttcaatataattgggtatatgaagataaatagtgggactagcgagaaatgtggcttcccctgcg 10601147  T
Q  187 agagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttac 285  Q
    ||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |    
T  10601146 agagtgtgagccaccacattagcttgtcgccgaacaaactccacctgagagttggtaaacttggacgagagcaaagaccggaaagtcgtgatgatgttgc 10601047  T
Q  286 caaattctgttatgtcttcctgacc 310  Q
    ||||||| |||||||||||| ||||    
T  10601046 caaattcagttatgtcttcccgacc 10601022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 88 - 327
Target Start/End: Original strand, 20526159 - 20526401
Alignment:
Q  88 aaaagtgcttaatgcatttcattagta--atcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgc 185  Q
    ||||||| |||  ||||||||||||||  || ||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||| ||||||||    
T  20526159 aaaagtgtttatagcatttcattagtataattaaagtttcaatacaattgggtatatgaaaataaatagtgcgactagtgagaaatgtggcctcccctgc 20526258  T
Q  186 gagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgtta 284  Q
    |||||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||   |||| ||||||    
T  20526259 gagagtatgagccaccacattaacttgtcgccgaacaaactccacccgagagttggtaaatttgaacgagagcaaaaaccgggaagcaatgataatgtta 20526358  T
Q  285 ccaaattctgttatgtcttcctgacccgaatatagagcatctt 327  Q
    || | ||| |||||||||||| ||||||| || | ||||||||    
T  20526359 ccgacttcagttatgtcttcccgacccgagtaaatagcatctt 20526401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 23558803 - 23558718
Alignment:
Q  88 aaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgt 173  Q
    |||||||||||   ||||||||||  ||||||||| |||||||| | |||||| ||||||||||| ||||||||||| ||||||||    
T  23558803 aaaagtgcttataacatttcattaacaatcaaagtctcaatacattggggtatgtgaaaataaatagtgggactagctagaaatgt 23558718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 14505859 - 14505721
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 200  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  | ||||||||| | | | ||||| |||| ||| ||||  ||||| ||    
T  14505859 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagcatgagcaac 14505760  T
Q  201 cacattagcttat-gccgaacaaactccacccgagagtt 238  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  14505759 cacgttggcttgtcgcctaacaaactccaccctagagtt 14505721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 37590039 - 37590177
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 200  Q
    ||||||||||| |||| | ||||||||||||||||||||||| ||||||||  | || |||||| | | | ||||| |||| ||| ||||  ||||| ||    
T  37590039 gcatttcattaataataagagtttcaatacaattgggtatattaaaataaacggcggaactagctaaagacgtggcctcccttgcaagagcatgagcaac 37590138  T
Q  201 cacattagcttat-gccgaacaaactccacccgagagtt 238  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  37590139 cacgttggcttgtcgcctaacaaactccaccctagagtt 37590177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 19299023 - 19299086
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 164  Q
    ||||||||||| |||| ||| ||||||||||||||||||||| ||||||||  | |||||||||    
T  19299023 gcatttcattaataataaaaatttcaatacaattgggtatatcaaaataaacggcgggactagc 19299086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 15990412 - 15990550
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 200  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  | ||||||||| | | | ||||| |||| ||| ||||  ||||| ||    
T  15990412 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagcatgagcaac 15990511  T
Q  201 cacattagcttat-gccgaacaaactccacccgagagtt 238  Q
    ||| |  |||| | ||| |||||||||||||| ||||||    
T  15990512 cacgtaggcttgtcgcctaacaaactccaccctagagtt 15990550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 3e-78; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 87 - 305
Target Start/End: Original strand, 16678732 - 16678952
Alignment:
Q  87 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcg 186  Q
    ||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  16678732 gaaaagtgcttatagcatttcattagtaatcaaagtttcaatccaattgggtatatgaaaataaatagtgggacaagcgagaaatgtggcttcccctgcg 16678831  T
Q  187 agagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttac 285  Q
    |||||||||||||||||||||  || | |||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| |||||||||||| |    
T  16678832 agagtgtgagccaccacattaatttgtcgccgaacaaactccacgcgagagttggtaaactttgacgagagcaaagaccgggaagccgtgatgatgttgc 16678931  T
Q  286 caaattctg-ttatgtcttcc 305  Q
    ||||||| | |||||||||||    
T  16678932 caaattcagtttatgtcttcc 16678952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 87 - 327
Target Start/End: Complemental strand, 47726415 - 47726169
Alignment:
Q  87 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcg 186  Q
    |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  47726415 gaaaagtgtttatagcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaatagtgggactagcgagaaatgtggctttccctgcg 47726316  T
Q  187 agagtgtgagccaccacat-----tagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgat 280  Q
    |||||||||| ||||||||     |||||| | ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||   ||||||||    
T  47726315 agagtgtgagacaccacattataatagcttgtcgccaaacaaactccactcgagagttggtaaacttggacgagagcaaagaccgggaatatgtgatgat 47726216  T
Q  281 gttaccaaattctgttatgtcttcctgacccgaatatagagcatctt 327  Q
    ||| |||||||| |||||||||||| ||| ||| || ||||| ||||    
T  47726215 gttgccaaattcagttatgtcttcccgactcgagtaaagagcgtctt 47726169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 87 - 327
Target Start/End: Complemental strand, 47747721 - 47747475
Alignment:
Q  87 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcg 186  Q
    |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  47747721 gaaaagtgtttatagcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaatagtgggactagcgagaaatgtggctttccctgcg 47747622  T
Q  187 agagtgtgagccaccacat-----tagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgat 280  Q
    |||||||||| ||||||||     |||||| | ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||   ||||||||    
T  47747621 agagtgtgagacaccacattataatagcttgtcgccaaacaaactccactcgagagttggtaaacttggacgagagcaaagaccgggaatatgtgatgat 47747522  T
Q  281 gttaccaaattctgttatgtcttcctgacccgaatatagagcatctt 327  Q
    ||| |||||||| |||||||||||| ||| ||| || ||||| ||||    
T  47747521 gttgccaaattcagttatgtcttcccgactcgagtaaagagcgtctt 47747475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 106 - 277
Target Start/End: Original strand, 34696110 - 34696282
Alignment:
Q  106 tcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacat 205  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||    | ||||||| ||||| ||||  || ||| ||||||| ||||| |||||||    
T  34696110 tcattaataatcaaagtttcaatacaatggggtatatgaaaataaacaacgagactagctagaaacgtggtctctccttcgagagtatgagcaaccacat 34696209  T
Q  206 tagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgat 277  Q
    |  ||| |  || | |||||||||||||||||||| | |||||| | ||||| | |  |||||||| ||||||    
T  34696210 tttcttgtctcctagcaaactccacccgagagttgttgaacttggaagagagaagaatccgggaagccgtgat 34696282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 101 - 240
Target Start/End: Complemental strand, 41117327 - 41117187
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 200  Q
    ||||||||||  |||| | ||||| ||||||||||||||| | ||||||||  ||||||||||| || || |||||||| | ||| ||||  ||||| ||    
T  41117327 gcatttcattgataataatagtttgaatacaattgggtatctcaaaataaacggtgggactagctagtaacgtggcttctcttgcaagagcatgagcaac 41117228  T
Q  201 cacattagcttat-gccgaacaaactccacccgagagttgg 240  Q
    | |||| |||| | ||| |||||||||||||||||||||||    
T  41117227 ctcattggcttgtcgcctaacaaactccacccgagagttgg 41117187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 2002526 - 2002677
Alignment:
Q  88 aaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcga 187  Q
    ||||||| |||  |||| |||||| |||||||||||||||||||| | ||||||  ||||||| |    |||||||||||||||||||  || | |||||    
T  2002526 aaaagtgtttatagcatctcattaataatcaaagtttcaatacaactaggtataataaaataagtaactggactagcgagaaatgtggtctctcatgcga 2002625  T
Q  188 gagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagtt 238  Q
    |||| ||||| |||||||| |||| |  ||  ||||||||||||||||||||    
T  2002626 gagtatgagcaaccacatttgcttgtctcctgacaaactccacccgagagtt 2002677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 30981359 - 30981259
Alignment:
Q  106 tcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacat 205  Q
    |||||| |||| ||||||||||||||| ||||||||  ||||||| |   || |||||||||||||||| | |  ||||||||||| ||||| |||||||    
T  30981359 tcattaataattaaagtttcaatacaactgggtataacaaaataagtaacggaactagcgagaaatgtgacctttcctgcgagagtatgagcaaccacat 30981260  T
Q  206 t 206  Q
    |    
T  30981259 t 30981259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 425 - 514
Target Start/End: Complemental strand, 47063148 - 47063063
Alignment:
Q  425 tgccaagtttggggtgggagtggctagtagatatatagtagaaacaacgccttctagttccacatcgctgcaaagaaacattacatacat 514  Q
    ||||||||| |||||| ||||||  ||||||||    ||||||| |||||||  |||| ||||||||||||||||||||||| |||||||    
T  47063148 tgccaagttgggggtgagagtggagagtagata----gtagaaataacgcctggtagtcccacatcgctgcaaagaaacatttcatacat 47063063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 549
Target Start/End: Complemental strand, 47026850 - 47026785
Alignment:
Q  484 ccacatcgctgcaaagaaacattacatacatgaagatatcttatataagtgcctttgacaaagtca 549  Q
    ||||||||||||||| ||||||| |||||||| | || | |||||||| ||||||||||| |||||    
T  47026850 ccacatcgctgcaaacaaacattgcatacatggacatgttttatataattgcctttgacagagtca 47026785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 238
Target Start/End: Original strand, 21701457 - 21701613
Alignment:
Q  83 gagggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccc 182  Q
    |||||||| |||||||  ||||||||||| | || | |||||||||||||||| |||||| | ||||||  | ||||||||| | | | ||||| || |     
T  21701457 gagggaaacgtgcttatagcatttcattaatcataagagtttcaatacaattgagtatatcataataaacggcgggactagctaaagacgtggcctctcg 21701556  T
Q  183 tgcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagtt 238  Q
    ||  ||||  ||||| ||||| || |||||| ||| |||||||||||||| ||||||    
T  21701557 tgaaagagcatgagcaaccacgttggcttatcgcctaacaaactccaccctagagtt 21701613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 30033720 - 30033582
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 200  Q
    ||||||||||  |||| | |||||||||| |||||||||||| ||||||||  | ||||||||| | | | ||||| |||| ||| ||||  ||||| ||    
T  30033720 gcatttcatttataataagagtttcaatataattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagcatgagcaac 30033621  T
Q  201 cacattagcttat-gccgaacaaactccacccgagagtt 238  Q
    |||  | |||| | ||| |||||||||||||| ||||||    
T  30033620 cacgctggcttgtcgcctaacaaactccaccctagagtt 30033582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 4e-74; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 83 - 327
Target Start/End: Original strand, 30140922 - 30141167
Alignment:
Q  83 gagggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccc 182  Q
    ||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||      
T  30140922 gagggaaaagtgcttatagcatttcattaataatcaaagtttcaatacaattgggtatatgaaaatagatagcgggactagcgagaaatgtggcttcctt 30141021  T
Q  183 tgcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatg 281  Q
    ||| ||||||||| ||||||||||||||| | ||| |||||||||||||| |||||||||||||||| || | ||||||||||||||||  |||||||||    
T  30141022 tgcaagagtgtgatccaccacattagcttgtcgcctaacaaactccaccctagagttggtaaacttggacaaaagcaaagaccgggaagctgtgatgatg 30141121  T
Q  282 ttaccaaattctgttatgtcttcctgacccgaatatagagcatctt 327  Q
    || ||| |||| |||||||||||| |||||||||| ||| ||||||    
T  30141122 tttccacattccgttatgtcttcccgacccgaataaagaccatctt 30141167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 244
Target Start/End: Complemental strand, 16416738 - 16416595
Alignment:
Q  102 catttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccacc 201  Q
    |||||||||| |||| | || ||||||||||||||||||||||||||||||  || ||||||| || |||||| | || ||||| ||| |  |||| |||    
T  16416738 catttcattaataataagaggttcaatacaattgggtatatgaaaataaataatgagactagctagtaatgtgacatctcctgcaagaatacgagcaacc 16416639  T
Q  202 acattagcttat-gccgaacaaactccacccgagagttggtaaa 244  Q
     ||||  ||| | ||| |||||||| ||||| ||||||||||||    
T  16416638 tcatttacttgtcgcctaacaaactacaccctagagttggtaaa 16416595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 244
Target Start/End: Original strand, 23508844 - 23508996
Alignment:
Q  93 tgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtg 192  Q
    |||||| |||||||||||| |||| | || |||||||||||  ||||| ||||| ||||    |||||||||  | ||||||||||| ||||| |||       
T  23508844 tgcttattgcatttcattaataataagaggttcaatacaatcaggtatgtgaaattaaacaacgggactagctcgtaatgtggcttctcctgcaagaaca 23508943  T
Q  193 tgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaa 244  Q
    ||||| ||| |||| |||| | ||| |||||||||||||| ||| ||||||||    
T  23508944 tgagcaaccccatttgcttgtcgcctaacaaactccaccctagaattggtaaa 23508996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 34355746 - 34355809
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 164  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  | |||||||||    
T  34355746 gcatttcattgataataagagtttcaatacaattgggtatatcaaaataaacagcgggactagc 34355809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 16890356 - 16890298
Alignment:
Q  93 tgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaa 151  Q
    |||||| |||||||||||| |||  | |||||||| |||||||||||||| ||||||||    
T  16890356 tgcttattgcatttcattaataacaagagtttcaaaacaattgggtatatcaaaataaa 16890298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 17391997 - 17392034
Alignment:
Q  106 tcattagtaatcaaagtttcaatacaattgggtatatg 143  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  17391997 tcattaataatcaaagtttcaatacaatagggtatatg 17392034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 2e-69; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 83 - 327
Target Start/End: Original strand, 54027686 - 54027931
Alignment:
Q  83 gagggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccc 182  Q
    |||||||| |||||||   |||||||||| ||||||||||||||||| |||||||||||||||||||||| | |||| ||||||||||||||||||||||    
T  54027686 gagggaaatgtgcttatatcatttcattaataatcaaagtttcaatataattgggtatatgaaaataaatagcgggagtagcgagaaatgtggcttcccc 54027785  T
Q  183 tgcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatg 281  Q
    | | ||||||||||||||||||||||||| | ||| || ||||||||||| |||||||||||||||| || |||| |||||||||||||| |||||||||    
T  54027786 tacaagagtgtgagccaccacattagcttgtcgcctaaaaaactccaccctagagttggtaaacttggacaagagtaaagaccgggaagttgtgatgatg 54027885  T
Q  282 ttaccaaattctgttatgtcttcctgacccgaatatagagcatctt 327  Q
    ||||||||||| ||||| |||||| ||| |||| | ||||| ||||    
T  54027886 ttaccaaattcggttatatcttcccgactcgaacaaagagcgtctt 54027931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 84 - 327
Target Start/End: Complemental strand, 12355379 - 12355135
Alignment:
Q  84 agggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccct 183  Q
    ||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||  |    
T  12355379 agggaaaggtgcttaaagcatttcattaataatcaaagtttcaatacaattgggtatatgaaaatagatagtgggactagcgagaaatgtggtttccttt 12355280  T
Q  184 gcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgt 282  Q
    |  ||||||||||||||||||||| ||| | ||| |||||||||||||| |||||||||||||||| || | ||||| ||||||||||  |||||||| |    
T  12355279 ggaagagtgtgagccaccacattaccttgtcgcctaacaaactccaccctagagttggtaaacttggacaaaagcaaggaccgggaagctgtgatgatat 12355180  T
Q  283 taccaaattctgttatgtcttcctgacccgaatatagagcatctt 327  Q
    | |||||||| |||||||||||| |||||||||| ||| ||||||    
T  12355179 ttccaaattccgttatgtcttcccgacccgaataaagaccatctt 12355135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 87 - 316
Target Start/End: Original strand, 27066334 - 27066564
Alignment:
Q  87 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcg 186  Q
    |||| |||||||  ||||||||||| ||||||||||||||||||||||| ||||||||||||| || | |||||||||||||||||||||||||  |||     
T  27066334 gaaatgtgcttatagcatttcattaataatcaaagtttcaatacaattgagtatatgaaaatagatagcgggactagcgagaaatgtggcttcctttgca 27066433  T
Q  187 agagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttac 285  Q
    ||||||||| ||||||||||||||| | ||| |||||||||||||| |||||||||||||||| || | ||||||||||||||||| ||||||||||| |    
T  27066434 agagtgtgacccaccacattagcttgtcgcccaacaaactccaccctagagttggtaaacttggacaaaagcaaagaccgggaagttgtgatgatgtttc 27066533  T
Q  286 caaattctgttatgtcttcctgacccgaata 316  Q
    |||||||  ||||||||||| ||||||||||    
T  27066534 caaattccattatgtcttcccgacccgaata 27066564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 87 - 316
Target Start/End: Original strand, 27087435 - 27087665
Alignment:
Q  87 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcg 186  Q
    |||| |||||||  ||||||||||| ||||||||||||||||||||||| ||||||||||||| || | |||||||||||||||||||||||||  |||     
T  27087435 gaaatgtgcttatagcatttcattaataatcaaagtttcaatacaattgagtatatgaaaatagatagcgggactagcgagaaatgtggcttcctttgca 27087534  T
Q  187 agagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttac 285  Q
    ||||||||| ||||||||||||||| | ||| |||||||||||||| |||||||||||||||| || | |||||||||||| |||| ||||||||||| |    
T  27087535 agagtgtgacccaccacattagcttgtcgcctaacaaactccaccctagagttggtaaacttggacaaaagcaaagaccggaaagttgtgatgatgtttc 27087634  T
Q  286 caaattctgttatgtcttcctgacccgaata 316  Q
    |||||||  ||||||||||| ||||||||||    
T  27087635 caaattccattatgtcttcccgacccgaata 27087665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 137 - 316
Target Start/End: Original strand, 27066578 - 27066758
Alignment:
Q  137 gtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgaga 235  Q
    ||||||||||||| || | |||||||||||||||||||||||||  ||| ||||||||| ||||||||||||||| | ||| |||||||||||||| |||    
T  27066578 gtatatgaaaatagatagcgggactagcgagaaatgtggcttcctttgcaagagtgtgacccaccacattagcttgtcgcctaacaaactccaccctaga 27066677  T
Q  236 gttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttaccaaattctgttatgtcttcctgacccgaata 316  Q
    ||||||||||||| || | |||||||||||| |||| ||||||||||| ||||||||  ||||||||||| ||||||||||    
T  27066678 gttggtaaacttggacaaaagcaaagaccggaaagttgtgatgatgtttccaaattccattatgtcttcccgacccgaata 27066758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 137 - 316
Target Start/End: Original strand, 27066772 - 27066952
Alignment:
Q  137 gtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgaga 235  Q
    ||||||||||||| || | |||||||||||||||||||||||||  ||| ||||||||| ||||||||||||||| | ||| |||||||||||||| |||    
T  27066772 gtatatgaaaatagatagcgggactagcgagaaatgtggcttcctttgcaagagtgtgacccaccacattagcttgtcgcctaacaaactccaccctaga 27066871  T
Q  236 gttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttaccaaattctgttatgtcttcctgacccgaata 316  Q
    ||||||||||||| || | |||||||||||| |||| ||||||||||| ||||||||  ||||||||||| ||||||||||    
T  27066872 gttggtaaacttggacaaaagcaaagaccggaaagttgtgatgatgtttccaaattccattatgtcttcccgacccgaata 27066952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 4462709 - 4462624
Alignment:
Q  102 catttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcga 187  Q
    ||||| |||| |||| |||||||||||||| |  | ||||||||||||||||||||||||||  || ||||||||||| |||||||    
T  4462709 cattttattaataataaaagtttcaatacattcagatatatgaaaataaattgtgggactagttagtaatgtggcttctcctgcga 4462624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 238
Target Start/End: Complemental strand, 28860936 - 28860789
Alignment:
Q  92 gtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagt 191  Q
    |||||||  |||| |||||  ||||||||| ||||||||||||| |||||  | |||||| |  || |||||| |  |||||||| || |  ||||||||    
T  28860936 gtgcttatagcatatcatttataatcaaagattcaatacaattgagtatagcataataaactacggcactagctaataatgtggcctctctagcgagagt 28860837  T
Q  192 gtgagccaccacattagcttat-gccgaacaaactccacccgagagtt 238  Q
    |||||| |||||||| |||| | ||| |||||||||||||||||||||    
T  28860836 gtgagctaccacattggcttgtcgcctaacaaactccacccgagagtt 28860789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 55227750 - 55227612
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 200  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  | ||||||||| | | ||||||| |||| ||| ||||  ||||| ||    
T  55227750 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagatgtggcctcccttgcaagagcatgagcaac 55227651  T
Q  201 cacattagcttat-gccgaacaaactccacccgagagtt 238  Q
    ||| || | || | ||| |||||||||||||| ||||||    
T  55227650 cacgttggtttgtcgcctaacaaactccaccctagagtt 55227612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 245
Target Start/End: Complemental strand, 13686146 - 13686001
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 200  Q
    ||||||||||| |||| | || ||||||||||| |||||||||||||||||   |||||||||| || || ||| |||| | ||| |||   ||||| ||    
T  13686146 gcatttcattaataataagagattcaatacaatcgggtatatgaaaataaacaatgggactagctagtaacgtgacttctcttgcaagaacatgagcaac 13686047  T
Q  201 cacattagcttat-gccgaacaaactccacccgagagttggtaaac 245  Q
    | | || |||| | ||| |||||||||||||| |||||||||||||    
T  13686046 cccgtttgcttgtcgcctaacaaactccaccctagagttggtaaac 13686001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 54823807 - 54823744
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 164  Q
    ||||||||||| |||| ||| ||||||||||||||||||||| ||||||||  | |||||||||    
T  54823807 gcatttcattaataataaaaatttcaatacaattgggtatatcaaaataaacggcgggactagc 54823744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 30859501 - 30859363
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 200  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  | ||||||||  | | | ||||| |||| ||| ||||  ||||| ||    
T  30859501 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagttaaagacgtggcctcccttgcaagagcatgagcaac 30859402  T
Q  201 cacattagcttat-gccgaacaaactccacccgagagtt 238  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  30859401 cacgttggcttgtcgcctaacaaactccaccctagagtt 30859363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 49745960 - 49745999
Alignment:
Q  129 acaattgggtatatgaaaataaattgtgggactagcgaga 168  Q
    |||||||||||||||||||||||| ||||||| |||||||    
T  49745960 acaattgggtatatgaaaataaatagtgggacaagcgaga 49745999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 20527781 - 20527847
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgag 167  Q
    ||||||||||  |||| | |||||||||||||| |||||||| | ||||||| | ||||||||||||    
T  20527781 gcatttcattgataataagagtttcaatacaatcgggtatatcataataaatggcgggactagcgag 20527847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 30190950 - 30191012
Alignment:
Q  102 catttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 164  Q
    |||||||||| |||| | ||||||||||||||||| ||||| ||||||||  | |||||||||    
T  30190950 catttcattaataataagagtttcaatacaattggatatatcaaaataaacggcgggactagc 30191012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 9e-63; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 83 - 316
Target Start/End: Original strand, 29754938 - 29755171
Alignment:
Q  83 gagggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccc 182  Q
    |||||||| |||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||| |      
T  29754938 gagggaaaggtgcttatagcatttcattaataatcaaagtttcaatacaattgggtatatgaaaatagatagcgggactagcgagaaatgtggctt-ctt 29755036  T
Q  183 tgcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatg 281  Q
    ||| ||||||||||||||||||||||||| | ||| |||||||||||||| |||||||||||||||| || | ||||| ||||||||||   ||||||||    
T  29755037 tgcaagagtgtgagccaccacattagcttgtcgcctaacaaactccaccctagagttggtaaacttggacaaaagcaaggaccgggaagctatgatgatg 29755136  T
Q  282 ttaccaaattctgttatgtcttcctgacccgaata 316  Q
    || |||||||| ||||||||||||  |||||||||    
T  29755137 tttccaaattccgttatgtcttcccaacccgaata 29755171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 87 - 327
Target Start/End: Complemental strand, 26683629 - 26683384
Alignment:
Q  87 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcg 186  Q
    ||||||||||||  | ||||||||||||||| |||||||||||||| || |||||||||||||||| | ||||||||| ||||||||||| ||||||||     
T  26683629 gaaaagtgcttatagaatttcattagtaatcgaagtttcaatacaactgagtatatgaaaataaatagcgggactagcaagaaatgtggcctcccctgca 26683530  T
Q  187 agagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttac 285  Q
    ||||| ||||||||||||||| ||| | || |||||||||||||||||||||||| ||||||| |||||||||||||| ||||||   |||| |||||||    
T  26683529 agagtatgagccaccacattaacttgtcgcggaacaaactccacccgagagttggaaaacttggacgagagcaaagacggggaagcaatgataatgttac 26683430  T
Q  286 caaattctgt----tatgtcttcctgacccgaatatagagcatctt 327  Q
    | | ||| ||    |||||||||| ||||||| || ||||||||||    
T  26683429 cgacttcagttatatatgtcttccagacccgagtaaagagcatctt 26683384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 102 - 316
Target Start/End: Original strand, 5335212 - 5335427
Alignment:
Q  102 catttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccacc 201  Q
    |||||||||| ||||||||||||||||| |||||| | |||||||||| || | | |||||||||||||||||||||||  ||| ||||||||||||| |    
T  5335212 catttcattaataatcaaagtttcaatataattggatttatgaaaatagatagcgagactagcgagaaatgtggcttcctttgcaagagtgtgagccaac 5335311  T
Q  202 acattagctt-atgccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttaccaaattctgttatgt 300  Q
    ||||||||||  |||| |||||||||||||| |||||||||||||||| || | | ||||||| ||||||  ||||||||||| |||||||| |||||||    
T  5335312 acattagcttgttgcctaacaaactccaccctagagttggtaaacttggacaaaaacaaagactgggaagctgtgatgatgtttccaaattcagttatgt 5335411  T
Q  301 cttcctgacccgaata 316  Q
    ||||| ||||||||||    
T  5335412 cttcccgacccgaata 5335427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 113 - 283
Target Start/End: Original strand, 22864512 - 22864683
Alignment:
Q  113 taatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacattagctt- 211  Q
    ||||||| |||||||||||||| ||||||| |||| |||| | ||||||||||| |||| |||| ||  |  ||||| | ||||||| || ||||| ||     
T  22864512 taatcaacgtttcaatacaattaggtatataaaaacaaatagcgggactagcgataaatatggcctcttcgacgagaatatgagccaacatattagtttg 22864611  T
Q  212 atgccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgtt 283  Q
     |||| |||||||| ||| |||||||||||||||||| |||| |||||||| | |||||  ||||| |||||    
T  22864612 ttgcctaacaaacttcactcgagagttggtaaacttggacgaaagcaaagatcaggaagcagtgataatgtt 22864683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 101 - 244
Target Start/End: Complemental strand, 36045055 - 36044911
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 200  Q
    ||||||||||| |||| | || ||||||||| | ||| |||||||||||||| ||||||||||| || ||||||||||| ||| | ||| | ||||| ||    
T  36045055 gcatttcattaataataagagattcaatacattcgggcatatgaaaataaatggtgggactagctagtaatgtggcttctcctacaagaatatgagcaac 36044956  T
Q  201 cacattagcttat-gccgaacaaactccacccgagagttggtaaa 244  Q
    | |||| |||| | ||| |||||||| ||| | ||||||||||||    
T  36044955 ctcattggcttgtcgcctaacaaacttcactctagagttggtaaa 36044911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 248
Target Start/End: Complemental strand, 40300027 - 40299892
Alignment:
Q  114 aatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacattagcttat 213  Q
    ||||||||| |||||||||   ||||||||||||||||    || |||||||||||||||||| ||  || ||||||| ||||| ||||| || |||| |    
T  40300027 aatcaaagtctcaatacaaagtggtatatgaaaataaacaacggaactagcgagaaatgtggcctcttctacgagagtatgagcaaccacgtttgcttgt 40299928  T
Q  214 -gccgaacaaactccacccgagagttggtaaacttg 248  Q
     ||| |||||||||||||||||||||| | ||||||    
T  40299927 cgcctaacaaactccacccgagagttgttgaacttg 40299892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 22292517 - 22292379
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 200  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  | ||||||||| | | | ||||| |||| ||| ||||  ||||| ||    
T  22292517 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagcatgagcaac 22292418  T
Q  201 cacattagcttat-gccgaacaaactccacccgagagtt 238  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  22292417 cacgttggcttgtcgcctaacaaactccaccctagagtt 22292379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 23976684 - 23976592
Alignment:
Q  84 agggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggc 176  Q
    |||||||||||||||  |||| |||||| |||||||||||||||||||  | ||||||  ||||||| |   ||||||| |||||||||||||    
T  23976684 agggaaaagtgcttatagcatatcattaataatcaaagtttcaatacatctaggtataataaaataagtaacgggactaacgagaaatgtggc 23976592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 240
Target Start/End: Complemental strand, 27493391 - 27493251
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 200  Q
    ||||||||||  ||||||||| |||||||||||||||||||  | |||||| || ||||||||| |  || ||||| ||  |||||||||| |||||  |    
T  27493391 gcatttcatttataatcaaagattcaatacaattgggtataacataataaactgcgggactagctaataacgtggcctcttctgcgagagtatgagctgc 27493292  T
Q  201 cacattagcttat-gccgaacaaactccacccgagagttgg 240  Q
     ||||| |||| | ||  ||||||||||||| |||||||||    
T  27493291 tacattggcttgtcgcttaacaaactccacctgagagttgg 27493251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 13948782 - 13948841
Alignment:
Q  92 gtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaa 151  Q
    |||||||  |||| ||| || ||||||||||||||||||||| |||||||||||||||||    
T  13948782 gtgcttatagcatatcaataataatcaaagtttcaatacaatagggtatatgaaaataaa 13948841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 18759870 - 18759803
Alignment:
Q  84 agggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaa 151  Q
    |||||||  ||||||  ||||||||||| |||| |||||||||||| |||||||||||| ||||||||    
T  18759870 agggaaacatgcttatagcatttcattaataataaaagtttcaatataattgggtatatcaaaataaa 18759803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1964 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: scaffold1964
Description:

Target: scaffold1964; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 149 - 327
Target Start/End: Complemental strand, 1202 - 1023
Alignment:
Q  149 aaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaactt 247  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  1202 aaatagtggaactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacattagcttgtcgccgaacaaactccacccgagagttggtaaactt 1103  T
Q  248 gaacgagagcaaagaccgggaagtcgtgatgatgttaccaaattctgttatgtcttcctgacccgaatatagagcatctt 327  Q
    | |||||||||||||| || ||| |||||| ||||| |||||||| |||||||||||| ||||||| || ||||| ||||    
T  1102 ggacgagagcaaagactggaaagccgtgataatgttgccaaattcagttatgtcttcccgacccgagtaaagagcgtctt 1023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0643 (Bit Score: 104; Significance: 2e-51; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 86 - 292
Target Start/End: Complemental strand, 1201 - 994
Alignment:
Q  86 ggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgc 185  Q
    ||||| |||||||  ||||||||||| ||||||||  |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||     
T  1201 ggaaaggtgcttatagcatttcattaataatcaaacattcaatacaattgggtatatgaaaataaatagcgggactagcgagaaatgtggcttcccttgt 1102  T
Q  186 gagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgtta 284  Q
     ||| |||||||||||||||||| || | ||| |||||||||||||| |||||||||||||||| || | |||| ||||||||| |  |||||||||||     
T  1101 aagattgtgagccaccacattagtttgtcgcctaacaaactccaccctagagttggtaaacttggacaaaagcatagaccgggaggctgtgatgatgttt 1002  T
Q  285 ccaaattc 292  Q
    ||||||||    
T  1001 ccaaattc 994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 2e-51; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 90 - 324
Target Start/End: Original strand, 12370776 - 12371011
Alignment:
Q  90 aagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgaga 189  Q
    |||||||||  |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |  |||||||| ||||||||||| |||||||| |||    
T  12370776 aagtgcttatagcattttattagtaatcaaagtttcaatacaattggatatatgaaaataaatagcaggactagcaagaaatgtggcctcccctgcaaga 12370875  T
Q  190 gtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttaccaa 288  Q
    || |||| |||||||||||||| | |||||| |||||||||| ||||||||| ||||||| || | | |||||| ||||||   ||||| |||||||| |    
T  12370876 gtatgagtcaccacattagcttgtcgccgaataaactccaccagagagttggcaaacttggacaaaaacaaagatcgggaaacagtgataatgttaccga 12370975  T
Q  289 attctgttatgtcttcctgacccgaatatagagcat 324  Q
     ||| |||||||||||| ||||||| || |||||||    
T  12370976 cttcagttatgtcttcccgacccgagtaaagagcat 12371011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 12749548 - 12749485
Alignment:
Q  113 taatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggc 176  Q
    |||||||||||||||||||||| |||| ||||||||||||   |||||||||||||||||||||    
T  12749548 taatcaaagtttcaatacaattaggtacatgaaaataaataacgggactagcgagaaatgtggc 12749485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 18765582 - 18765733
Alignment:
Q  88 aaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcga 187  Q
    |||||||||||  ||||||||||  ||||  ||| |||||||||||||||||||  | ||||||||  || |||||| |  |||||||| || |  ||||    
T  18765582 aaaagtgcttatagcatttcatttataatagaagattcaatacaattgggtataacataataaattacggcactagctattaatgtggcctctctagcga 18765681  T
Q  188 gagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagtt 238  Q
    |||| ||||| |||| ||| |||| | ||| |||||||||||||||||||||    
T  18765682 gagtatgagctaccaaattggcttgtcgcctaacaaactccacccgagagtt 18765733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 6006037 - 6006175
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 200  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  | ||||||||| | | | |||||||||| ||| ||||  ||||  ||    
T  6006037 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcttcccttgcaagagcatgagaaac 6006136  T
Q  201 cacattagcttat-gccgaacaaactccacccgagagtt 238  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  6006137 cacgttggcttgtcgcctaacaaactccaccctagagtt 6006175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 164
Target Start/End: Complemental strand, 31935395 - 31935315
Alignment:
Q  84 agggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 164  Q
    ||||||| |||||||  ||||||||||| | ||||||| |||||||||||||||||||| | ||||||  | |||||||||    
T  31935395 agggaaacgtgcttagagcatttcattaatcatcaaagattcaatacaattgggtatatcataataaacggcgggactagc 31935315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 206
Target Start/End: Original strand, 45680111 - 45680211
Alignment:
Q  106 tcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacat 205  Q
    |||||| |||||||||| |||||||||||||||||| |||||||||    ||||||||| | ||||||||| || | ||| ||||| ||||| | |||||    
T  45680111 tcattaataatcaaagtctcaatacaattgggtatacgaaaataaacaaagggactagcaaaaaatgtggcctctcttgcaagagtatgagcaatcacat 45680210  T
Q  206 t 206  Q
    |    
T  45680211 t 45680211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 17790290 - 17790152
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 200  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  |   ||||||| | | | ||||| |||| ||| |||| |||||| ||    
T  17790290 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggctagactagctaaagacgtggcctcccttgcaagagcgtgagcaac 17790191  T
Q  201 cacattagcttat-gccgaacaaactccacccgagagtt 238  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  17790190 cacgttggcttgtcgcctaacaaactccaccctagagtt 17790152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 19098732 - 19098594
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 200  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  |   ||||||| | | | ||||| |||| ||| |||| |||||| ||    
T  19098732 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggctagactagctaaagacgtggcctcccttgcaagagcgtgagcaac 19098633  T
Q  201 cacattagcttat-gccgaacaaactccacccgagagtt 238  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  19098632 cacgttggcttgtcgcctaacaaactccaccctagagtt 19098594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 36144864 - 36144802
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactag 163  Q
    ||||||||||| |||  | || ||||||||||| |||||||||||||||||| ||||||||||    
T  36144864 gcatttcattaataacaagaggttcaatacaatcgggtatatgaaaataaatagtgggactag 36144802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 35906934 - 35907012
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttc 179  Q
    ||||||||||  |||| | ||||||||||||||||||||| | ||||||||  | ||||||||| || || ||||||||    
T  35906934 gcatttcattgataatgatagtttcaatacaattgggtatctcaaaataaacagcgggactagctagtaacgtggcttc 35907012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 84 - 244
Target Start/End: Original strand, 288 - 449
Alignment:
Q  84 agggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccct 183  Q
    |||||||||||||||    ||||||||||||||||||| |||||||||||||||||||||||||||||| | || |||||| |||||||||   ||||||    
T  288 agggaaaagtgcttataatatttcattagtaatcaaagcttcaatacaattgggtatatgaaaataaatagcggaactagcaagaaatgtgatctcccct 387  T
Q  184 gcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaa 244  Q
     | ||||| ||| ||||||||||||||||| | ||| ||||||| |||||||||||||||||    
T  388 tcaagagtatgaaccaccacattagcttatcgtcgagcaaactctacccgagagttggtaaa 449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 4e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 101 - 244
Target Start/End: Complemental strand, 48770250 - 48770106
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 200  Q
    ||||||||||| |||| | |||||||||||| | |||||||||||||||||| |||||||||||  | ||||||||||| |||||||||   ||||| ||    
T  48770250 gcatttcattaataataagagtttcaatacattcgggtatatgaaaataaatggtgggactagcttgtaatgtggcttctcctgcgagaacatgagcaac 48770151  T
Q  201 cacattagcttat-gccgaacaaactccacccgagagttggtaaa 244  Q
    | ||||||||| | |||||| ||||||||||| ||||||||||||    
T  48770150 ctcattagcttctcgccgaataaactccaccctagagttggtaaa 48770106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 32480353 - 32480215
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 200  Q
    ||||||||||| |||| | |||||||||||||||| |||||| |||||||| || ||||||||| | | | ||||| |||| ||| ||||| ||||| ||    
T  32480353 gcatttcattaataataagagtttcaatacaattgagtatattaaaataaactgcgggactagctaaagacgtggcctcccttgcaagagtatgagcaac 32480254  T
Q  201 cacattagcttat-gccgaacaaactccacccgagagtt 238  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  32480253 cacgttggcttgtcgcctaacaaactccaccctagagtt 32480215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 240
Target Start/End: Complemental strand, 15633367 - 15633227
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 200  Q
    ||||||||||  |||| | ||||||||||||||||||||| | ||| ||||    ||||||||| || || |||||||| | ||| ||||| ||||| ||    
T  15633367 gcatttcattgataataatagtttcaatacaattgggtatttcaaagtaaacaacgggactagctagtaacgtggcttctcttgcaagagtatgagcaac 15633268  T
Q  201 cacattagcttat-gccgaacaaactccacccgagagttgg 240  Q
    | |||| |||| | ||| |||||||||||||||||||||||    
T  15633267 ctcattggcttgtcgcctaacaaactccacccgagagttgg 15633227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 30502643 - 30502581
Alignment:
Q  102 catttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 164  Q
    |||||||||| |||| | |||||||||||||| |||||||| |||||||| || |||||||||    
T  30502643 catttcattaataataagagtttcaatacaatcgggtatatcaaaataaactgcgggactagc 30502581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 3896621 - 3896540
Alignment:
Q  83 gagggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 164  Q
    ||||||||  ||||||  ||||||||||| |||| | |||||||||||||| |||||||| ||||||||  | |||||||||    
T  3896621 gagggaaacatgcttatagcatttcattaataataagagtttcaatacaatcgggtatatcaaaataaacggcgggactagc 3896540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 27810672 - 27810590
Alignment:
Q  103 atttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgc 185  Q
    ||||||||  |||| | ||||||||||||| ||||||||| ||||||||  | | ||||||| || |||||||| ||||||||    
T  27810672 atttcatttataataatagtttcaatacaactgggtatattaaaataaacagcgagactagcaaggaatgtggcctcccctgc 27810590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 248
Target Start/End: Original strand, 73345 - 73488
Alignment:
Q  106 tcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacat 205  Q
    |||||| |||||||||||||||||||||||||||||| ||| ||||    ||||||||| ||||| ||||  || |||||||| || | ||| |||||||    
T  73345 tcattaataatcaaagtttcaatacaattgggtatataaaagtaaacaacgggactagctagaaacgtggtctctcctgcgagtgtatcagcaaccacat 73444  T
Q  206 tagcttat-gccgaacaaactccacccgagagttggtaaacttg 248  Q
    | |||| |  |  | |||||||||||||||||||| | ||||||    
T  73445 ttgcttgtctcttagcaaactccacccgagagttgttgaacttg 73488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 238
Target Start/End: Complemental strand, 14344 - 14197
Alignment:
Q  92 gtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagt 191  Q
    |||||||  ||||||||||   |||| ||| ||||||||||||||||||| || |||||| |  || |||||| |  |||||||| || |  | || |||    
T  14344 gtgcttatagcatttcatttacaatcgaagattcaatacaattgggtataggataataaactacggcactagctaataatgtggcctctctagggacagt 14245  T
Q  192 gtgagccaccacattagcttat-gccgaacaaactccacccgagagtt 238  Q
    |||||| |||||||| |||| | ||| |||||||||||||||||||||    
T  14244 gtgagctaccacattggcttgtcgcctaacaaactccacccgagagtt 14197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 62490 - 62553
Alignment:
Q  101 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 164  Q
    ||||||||||| |||| | |||||||||||||||| |||||| ||||||||  | |||||||||    
T  62490 gcatttcattaataataagagtttcaatacaattgagtatattaaaataaacagcgggactagc 62553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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