View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4411_high_10 (Length: 494)
Name: NF4411_high_10
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 302 - 479
Target Start/End: Original strand, 42798249 - 42798424
Alignment:
| Q |
302 |
atatcttaaaactgatccaatttctatttgatttgtatgaatgctctcttttgtcgattctgtgtagaaatagcttatatttgggaagcttgtatgaatc |
401 |
Q |
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| T |
42798249 |
atatcttaaaactgatccaatttctatttaatttgtatgaatgctct--tttgtcgattctgtgtagaaatagcttatatttgggaagcttgtatgaatc |
42798346 |
T |
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| Q |
402 |
acagattaaaatttagcagacatgatagaatcacatattaatattggaacatgttactactttgtcaacattgtagtt |
479 |
Q |
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| T |
42798347 |
acagattaaaatttagcagacatgatagaatcacatattaatattggaagatgttactactttgtcaacattgtagtt |
42798424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 42797623 - 42797791
Alignment:
| Q |
1 |
tgcaaatagagaaagaaaatgtattccaacgaattggtaaaattgaacaaggatattgaactatcaaaaacttctttggaagataagatgtgtcatttag |
100 |
Q |
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| T |
42797623 |
tgcaaatagagaaagaaaatgtattccaacgaattggtagaattg-------------aactatcaaaaacttctttggaagataagatgtgtcatttag |
42797709 |
T |
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| Q |
101 |
aagcagttttatctaaccttcaccaaaatattcaatccatttccctatacatattaaaacaacgtaacttccaaaataatta |
182 |
Q |
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| T |
42797710 |
aagcagttttatctaaccttcaccaaaatattcaatccatttccctatacatattaaaacaacgtaacttccaaaataatta |
42797791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 42798152 - 42798208
Alignment:
| Q |
176 |
ataattattatcaactatatgctaaatcaagaaaccgtttgataatatgagttgtgc |
232 |
Q |
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| T |
42798152 |
ataattattatcaactatatgctaaatcaagaaaccatttgataatatgagttgtgc |
42798208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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