View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4411_high_12 (Length: 443)
Name: NF4411_high_12
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Complemental strand, 4981895 - 4981459
Alignment:
| Q |
18 |
accacaatgacctttgaaagggttgagaccaaaggggcactcctcttggtgaagaatgataaactcttatggttaatacattgagagagatatttaaggt |
117 |
Q |
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| T |
4981895 |
accacaatgacctttgaaagggttgagaccaaaggggcactcctcttggtgaagaatgataaactcttatggttaatacattgagagagatatttaaggt |
4981796 |
T |
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| Q |
118 |
aacagaaatccaaatcaagatagaaagtagttgtaatgtataaaaatagtgaaaacgaatatttttaaacataggaat-------------------ttg |
198 |
Q |
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| T |
4981795 |
aacagaaatccaaatcaagatagaaagtagttgtaatgtataaaaatagtgaaaacgaatatttttaaacataggaatgtttattgtgactgtgaatttg |
4981696 |
T |
|
| Q |
199 |
tgtgatcaaatttttaactgcacctatgttaagcaaataaatagagggatttgctataattgtgtttatggtatgaaattagatgcttttgcagtttagg |
298 |
Q |
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| T |
4981695 |
tgtgatcaaatttttaactgcacctatgttaagcaaataaatagagggatttgctataattgtgtttatggtatgaaattagatgcttttgcagtttagg |
4981596 |
T |
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| Q |
299 |
gaaaaacaaaatataccaagataaaattaaacgtactctttgaatgcacaaaagtaggttaatcactaattattaaaagcaccataatttaaatattgaa |
398 |
Q |
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| T |
4981595 |
gaaaaacaaaatataccaagataaaattaaacgtactctttgaatgcacaaaactaggttaatcactaattattaaaagcaccataatttaaatattgaa |
4981496 |
T |
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| Q |
399 |
taaatcatcaatttagtcactaattattatcttctct |
435 |
Q |
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| T |
4981495 |
taaatcatcaatttagtcactaattattatcttctct |
4981459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 4985091 - 4985035
Alignment:
| Q |
211 |
tttaactgcacctatgttaagcaaataaatagagggatttgctataattgtgtttat |
267 |
Q |
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| T |
4985091 |
tttaactgcgcctaagttaagcaaataaaaggatggattggctataattgtgtttat |
4985035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 4985231 - 4985159
Alignment:
| Q |
100 |
gagagagatatttaaggtaacagaaatccaaatcaagatagaaagtagttgtaatgtataaaaatagtgaaaa |
172 |
Q |
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| T |
4985231 |
gagagatatatttaaggtaactgataactaaaacaagacccaaaatagatgtaatgtataaaaatagtgaaaa |
4985159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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